RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
860802 860802 PRJNA884104_S_NODE_42221_length_319_cov_2.191057_g41478_i0 PRJNA884104 42221 319 2.191057 6.98947183 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 560 4.02e-155   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g41478 i0 98.433 171.514106583072 319 3 100 2 1 319 5625463 5625147 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 54713 560 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
5963912 5963912 PRJNA884104_S_NODE_35385_length_345_cov_3.095588_g34642_i0 PRJNA884104 35385 345 3.095588 10.6797786 Roseimicrobium gellanilyticum 748857 Bacteria Bacteria 627 4.259999999999999e-175   NTclustered gi|631251950|ref|NR_113148.1| 748857 g34642 i0 99.42 101.005797101449 345 2 100 0 1 345 1024 1368 Roseimicrobium gellanilyticum strain DC2a-G7 16S ribosomal RNA, partial sequence blastn 34847 627 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium gellanilyticum
5964609 5964609 PRJNA884104_S_NODE_69425_length_251_cov_0.865169_g68682_i0 PRJNA884104 69425 251 0.865169 2.17157419 Lacunisphaera limnophila 1838286 Bacteria Bacteria 172 1.67e-38   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g68682 i0 87.013 29.800796812749 154 18 61 2 7 159 3836038 3835886 Lacunisphaera limnophila strain IG16b, complete genome blastn 7480 172 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
17438525 17438525 PRJNA884104_S_NODE_20834_length_442_cov_2.086721_g20091_i0 PRJNA884104 20834 442 2.086721 9.22330682 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 778 0   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g20091 i0 98.416 77.1470588235294 442 7 100 0 1 442 5626226 5625785 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 34099 778 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
22538448 22538448 PRJNA884104_S_NODE_87178_length_236_cov_2.803681_g86435_i0 PRJNA884104 87178 236 2.803681 6.61668716 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 425 1.08e-114   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g86435 i0 99.153 281.245762711864 236 2 100 0 1 236 5626525 5626290 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 66374 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;