RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5963475 5963475 PRJNA884104_S_NODE_12645_length_567_cov_1.842105_g11914_i0 PRJNA884104 12645 567 1.842105 10.44473535 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 69.4 5.55e-7   NTclustered gi|690550114|emb|LN103918.1| 99802 g11914 i0 97.5 1.10229276895944 40 1 7 0 475 514 2953 2992 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0098179 blastn 625 69.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
9788746 9788746 PRJNA884104_S_NODE_44568_length_312_cov_1.033473_g43825_i0 PRJNA884104 44568 312 1.033473 3.22443576 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 154 7.77e-33   NTclustered gi|690929153|emb|LN438066.1| 99802 g43825 i0 82.941 9.77884615384615 170 29 54 0 3 172 301 132 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0186957 blastn 3051 154 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
18711788 18711788 PRJNA884104_S_NODE_23295_length_419_cov_2.459538_g22552_i0 PRJNA884104 23295 419 2.459538 10.30546422 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 483 1.21e-131   NTclustered gi|68479954|gb|DQ076149.1| 6182 g22552 i0 88.861 0.94272076372315 395 41 94 3 25 417 432 39 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 395 483 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;