RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA884104 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13614208 13614208 PRJNA884104_S_NODE_34111_length_351_cov_1.550360_g33368_i0 PRJNA884104 34111 351 1.55036 5.4417636 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 252 3.05e-62   NTclustered gi|294891115|ref|XM_002773382.1| 423536 g33368 i0 84.98 69.9430199430199 253 32 71 5 41 290 189 438 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 24550 252 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
22537433 22537433 PRJNA884104_S_NODE_36998_length_339_cov_0.868421_g36255_i0 PRJNA884104 36998 339 0.868421 2.94394719 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 230 1.3799999999999996e-55   NTclustered gi|294945377|ref|XM_002784604.1| 423536 g36255 i0 79.412 82.1327433628319 340 59 100 6 1 339 1426 1097 Perkinsus marinus ATCC 50983 heat shock protein,, putative, mRNA blastn 27843 230 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;