RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA884104 · 33 ✖

analysis 1

  • blastn · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
861441 861441 PRJNA884104_S_NODE_73781_length_248_cov_0.880000_g73038_i0 PRJNA884104 73781 248 0.88 2.1824 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|301112223|ref|XM_002905145.1| 403677 g73038 i0 97.059 0.137096774193548 34 0 13 1 3 35 196 229 Phytophthora infestans T30-4 uncharacterized protein (PITG_07253), partial mRNA blastn 34 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
2135962 2135962 PRJNA884104_S_NODE_31262_length_365_cov_3.767123_g30519_i0 PRJNA884104 31262 365 3.7671230000000002 13.74999895 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 350 1.1e-91   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g30519 i0 86.061 50.0657534246575 330 40 90 6 8 334 327 1 Phytophthora sojae hypothetical protein partial mRNA blastn 18274 350 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
3793210 3793210 PRJNA884104_S_NODE_60763_length_268_cov_1.184615_g60020_i0 PRJNA884104 60763 268 1.184615 3.1747682 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.12e-15   NTclustered gi|325183295|emb|FR824085.1| 890382 g60020 i0 77.778 4.27985074626866 180 25 67 6 71 250 34873 34709 Albugo laibachii Nc14, genomic contig CONTIG_40_NC14_v4_133649_231 blastn 1147 97.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4689034 4689034 PRJNA884104_S_NODE_36524_length_341_cov_0.861940_g35781_i0 PRJNA884104 36524 341 0.86194 2.9392154 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 180 1.42e-40   NTclustered gi|2794929698|ref|XM_067885402.1| 164328 g35781 i0 80.591 68.7184750733138 237 42 69 4 1 235 340 106 Phytophthora ramorum 60S ribosomal protein L18a (KRP23_14565), partial mRNA blastn 23433 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
4689325 4689325 PRJNA884104_S_NODE_50204_length_295_cov_1.630631_g49461_i0 PRJNA884104 50204 295 1.630631 4.81036145 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 193 1.55e-44   NTclustered gi|2794905079|ref|XM_067889715.1| 164328 g49461 i0 80.077 7.2271186440678 261 50 88 2 36 295 195 454 Phytophthora ramorum 33 kDa inner dynein arm light chain, axonemal (KRP23_4723), partial mRNA blastn 2132 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
5964370 5964370 PRJNA884104_S_NODE_5785_length_843_cov_2.100000_g5198_i0 PRJNA884104 5785 843 2.1 17.703 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 555 5.31e-153   NTclustered gi|2795038971|ref|XM_067942088.1| 4785 g5198 i0 78.953 77.0628706998814 860 147 99 28 1 837 191 1039 Phytophthora cinnamomi adenosylhomocysteinase (IUM83_17157), partial mRNA blastn 64964 555 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7238443 7238443 PRJNA884104_S_NODE_18366_length_470_cov_1.526448_g17625_i0 PRJNA884104 18366 470 1.526448 7.1743056 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 63.9 2.11e-5   NTclustered gi|675181624|ref|XM_008901449.1| 761204 g17625 i0 95 0.229787234042553 40 2 9 0 361 400 141 102 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 108 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8513139 8513139 PRJNA884104_S_NODE_16127_length_500_cov_3.423888_g15389_i0 PRJNA884104 16127 500 3.423888 17.11944 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 361 7.15e-95   NTclustered gi|695424642|ref|XM_009530689.1| 67593 g15389 i0 82.381 79.902 420 68 83 5 27 443 457 41 Phytophthora sojae hypothetical protein mRNA blastn 39951 361 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8513538 8513538 PRJNA884104_S_NODE_36247_length_342_cov_1.144981_g35504_i0 PRJNA884104 36247 342 1.144981 3.91583502 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|301091639|ref|XM_002895954.1| 403677 g35504 i0 100 0.900584795321637 28 0 8 0 263 290 4974 5001 Phytophthora infestans T30-4 helitron helicase-like protein (PITG_23183), partial mRNA blastn 308 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
9789071 9789071 PRJNA884104_S_NODE_60608_length_268_cov_1.579487_g59865_i0 PRJNA884104 60608 268 1.579487 4.23302516 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 145 3.94e-30   NTclustered gi|669144283|ref|XM_008609482.1| 1156394 g59865 i0 80.095 7.82089552238806 211 29 77 10 59 264 999 797 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 2096 145 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
10169843 10169843 PRJNA884104_S_NODE_51108_length_293_cov_1.050000_g50365_i0 PRJNA884104 51108 293 1.05 3.0765 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 198 3.2999999999999994e-46   NTclustered gi|2795043497|ref|XM_067924623.1| 4785 g50365 i0 79.333 67.1501706484642 300 48 100 11 1 293 659 367 Phytophthora cinnamomi 2-amino-3-ketobutyrate coenzyme A ligase (IUM83_00819), partial mRNA blastn 19675 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11063955 11063955 PRJNA884104_S_NODE_23509_length_418_cov_1.113043_g22766_i0 PRJNA884104 23509 418 1.113043 4.65251974 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.011   NTclustered gi|675214874|ref|XM_008918074.1| 761204 g22766 i0 96.875 0.15311004784689 32 1 8 0 17 48 88 119 Phytophthora parasitica INRA-310 hypothetical protein partial mRNA blastn 64 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
11064263 11064263 PRJNA884104_S_NODE_39309_length_329_cov_7.398438_g38566_i0 PRJNA884104 39309 329 7.398438 24.34086102 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 281 3.63e-71   NTclustered gi|2289|emb|X59936.1| 4766 g38566 i0 87.603 71.7963525835866 242 30 74 0 85 326 1 242 A.bisexualis gene for actin blastn 23621 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
12339980 12339980 PRJNA884104_S_NODE_46970_length_305_cov_0.956897_g46227_i0 PRJNA884104 46970 305 0.956897 2.91853585 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2794904943|ref|XM_067889679.1| 164328 g46227 i0 100 0.0983606557377049 30 0 10 0 101 130 1155 1126 Phytophthora ramorum Calreticulin (KRP23_4690), partial mRNA blastn 30 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
14889054 14889054 PRJNA884104_S_NODE_5732_length_847_cov_2.600775_g5148_i0 PRJNA884104 5732 847 2.600775 22.02856425 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 438 5.600000000000001e-118   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g5148 i0 78.142 71.6989374262102 732 131 85 22 117 838 316 1028 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 60729 438 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16163931 16163931 PRJNA884104_S_NODE_63973_length_260_cov_2.983957_g63230_i0 PRJNA884104 63973 260 2.983957 7.7582882 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 134 8.23e-27   NTclustered gi|695380019|ref|XM_009518396.1| 67593 g63230 i0 79.781 24.9769230769231 183 37 70 0 70 252 438 256 Phytophthora sojae hypothetical protein mRNA blastn 6494 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16543878 16543878 PRJNA884104_S_NODE_86933_length_240_cov_2.101796_g86190_i0 PRJNA884104 86933 240 2.101796 5.0443104 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 174 4.42e-39   NTclustered gi|156986865|gb|EU079952.1| 4785 g86190 i0 85.542 45.2416666666667 166 24 69 0 1 166 1224 1389 Phytophthora cinnamomi isolate PD_00188(P8495) heat shock protein 90 (HSP90) gene, partial cds blastn 10858 174 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17438578 17438578 PRJNA884104_S_NODE_23694_length_416_cov_1.539359_g22951_i0 PRJNA884104 23694 416 1.539359 6.40373344 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 379 1.62e-100   NTclustered gi|675210554|ref|XM_008915914.1| 761204 g22951 i0 83.373 90.7259615384615 415 63 99 6 1 412 788 1199 Phytophthora parasitica INRA-310 ATP-dependent RNA helicase eIF4A partial mRNA blastn 37742 379 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
17818750 17818750 PRJNA884104_S_NODE_34234_length_350_cov_2.956679_g33491_i0 PRJNA884104 34234 350 2.956679 10.3483765 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 337 8.149999999999997e-88   NTclustered gi|2794889416|ref|XM_067886769.1| 164328 g33491 i0 85.759 91.5142857142857 323 40 91 6 8 327 817 1136 Phytophthora ramorum ATP-dependent RNA helicase eIF4A (KRP23_2082), partial mRNA blastn 32030 337 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18711553 18711553 PRJNA884104_S_NODE_12155_length_578_cov_38.035644_g11428_i0 PRJNA884104 12155 578 38.035644 219.84602232 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.69e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g11428 i0 80.533 58.5259515570934 375 65 64 4 192 559 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
18713042 18713042 PRJNA884104_S_NODE_86755_length_241_cov_0.916667_g86012_i0 PRJNA884104 86755 241 0.916667 2.20916747 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 171 5.74e-38   NTclustered gi|2795028740|ref|XM_067928779.1| 4785 g86012 i0 83.333 67.3983402489627 186 29 77 2 18 202 185 1 Phytophthora cinnamomi tubulin alpha chain (IUM83_04683), partial mRNA blastn 16243 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19987776 19987776 PRJNA884104_S_NODE_59136_length_272_cov_1.160804_g58393_i0 PRJNA884104 59136 272 1.160804 3.15738688 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|669155207|ref|XM_008614944.1| 1156394 g58393 i0 94.118 0.125 34 2 13 0 132 165 1094 1061 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 34 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
21263438 21263438 PRJNA884104_S_NODE_77137_length_246_cov_0.890173_g76394_i0 PRJNA884104 77137 246 0.890173 2.18982558 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 237 5.72e-58   NTclustered gi|189084149|gb|BT031665.1| 4784 g76394 i0 89.005 30.4552845528455 191 21 78 0 56 246 1308 1118 Phytophthora capsici clone CBOT53-I08 mRNA sequence blastn 7492 237 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
21263646 21263646 PRJNA884104_S_NODE_9177_length_667_cov_1.797980_g8474_i0 PRJNA884104 9177 667 1.79798 11.9925266 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 302 5.98e-77   NTclustered gi|695426839|ref|XM_009531227.1| 67593 g8474 i0 80.702 22.1169415292354 399 68 59 8 84 479 48 440 Phytophthora sojae hypothetical protein mRNA blastn 14752 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
22536952 22536952 PRJNA884104_S_NODE_12978_length_559_cov_3.456790_g12247_i0 PRJNA884104 12978 559 3.45679 19.3234561 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 296 2.3e-75   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g12247 i0 78.243 63.484794275492 478 92 85 9 77 549 527 57 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 35488 296 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
22537259 22537259 PRJNA884104_S_NODE_28398_length_382_cov_1.411003_g27655_i0 PRJNA884104 28398 382 1.411003 5.39003146 Phytophthora borneensis 3073755 SAR_Eukaryotes SAR_Eukaryotes 307 7.04e-79   NTclustered gi|2689409031|gb|OR569833.1| 3073755 g27655 i0 81.723 100.227748691099 383 56 98 11 3 375 677 299 Phytophthora borneensis isolate KA529 heat shock protein 90 (hsp90) gene, partial cds blastn 38287 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora borneensis
22537593 22537593 PRJNA884104_S_NODE_44858_length_311_cov_1.260504_g44115_i0 PRJNA884104 44858 311 1.260504 3.92016744 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 185 2.7499999999999993e-42   NTclustered gi|695462293|ref|XM_009540118.1| 67593 g44115 i0 80.833 1.70096463022508 240 42 77 2 34 271 495 258 Phytophthora sojae hypothetical protein partial mRNA blastn 529 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
22537770 22537770 PRJNA884104_S_NODE_52978_length_287_cov_2.322430_g52235_i0 PRJNA884104 52978 287 2.32243 6.6653741 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 259 1.46e-64   NTclustered gi|2795043644|ref|XM_067924034.1| 4785 g52235 i0 85.714 69.9965156794425 245 35 85 0 2 246 248 4 Phytophthora cinnamomi Rab7 family GTPase (IUM83_00274), partial mRNA blastn 20089 259 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22538455 22538455 PRJNA884104_S_NODE_8758_length_684_cov_2.024550_g8061_i0 PRJNA884104 8758 684 2.02455 13.847922 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 315 7.879999999999998e-81   NTclustered gi|695426456|ref|XM_009531130.1| 67593 g8061 i0 78.692 33.6008771929825 474 99 69 2 191 663 130 602 Phytophthora sojae hypothetical protein mRNA blastn 22983 315 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
22918928 22918928 PRJNA884104_S_NODE_84878_length_242_cov_0.911243_g84135_i0 PRJNA884104 84878 242 0.911243 2.20520806 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 159 1.2499999999999999e-34   NTclustered gi|2795045662|ref|XM_067939157.1| 4785 g84135 i0 82.682 30.995867768595 179 31 74 0 28 206 194 16 Phytophthora cinnamomi ribonucleoprotein-associated protein (IUM83_14412), partial mRNA blastn 7501 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23812664 23812664 PRJNA884104_S_NODE_24599_length_409_cov_0.886905_g23856_i0 PRJNA884104 24599 409 0.886905 3.62744145 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 62.1 6.53e-5   NTclustered gi|695414223|ref|XM_009527951.1| 67593 g23856 i0 100 3.71149144254279 33 0 8 0 177 209 589 621 Phytophthora sojae hypothetical protein partial mRNA blastn 1518 62.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
24192807 24192807 PRJNA884104_S_NODE_65019_length_258_cov_1.529730_g64276_i0 PRJNA884104 65019 258 1.52973 3.9467034 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 139 1.75e-28   NTclustered gi|2795048880|ref|XM_067943659.1| 4785 g64276 i0 95.402 31.8449612403101 87 4 34 0 172 258 450 364 Phytophthora cinnamomi Calmodulin (IUM83_18649), partial mRNA blastn 8216 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
25087175 25087175 PRJNA884104_S_NODE_59000_length_272_cov_1.547739_g58257_i0 PRJNA884104 59000 272 1.547739 4.20985008 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2794919727|ref|XM_067895228.1| 164328 g58257 i0 87.234 0.172794117647059 47 6 17 0 196 242 211 257 Phytophthora ramorum Caltractin ICL1b (KRP23_9648), partial mRNA blastn 47 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;