RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3411023 3411023 PRJNA884104_S_NODE_17783_length_477_cov_26.153465_g17043_i0 PRJNA884104 17783 477 26.153465 124.75202805 Pristionchus pauli 376545 Nematoda Nematoda 281 5.44e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g17043 i0 80.939 4.73165618448637 362 63 75 6 50 408 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2257 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
5963628 5963628 PRJNA884104_S_NODE_21005_length_440_cov_9.019074_g20262_i0 PRJNA884104 21005 440 9.019074 39.6839256 Caenorhabditis briggsae 6238 Nematoda Nematoda 337 1.0499999999999996e-87   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g20262 i0 87.671 68.5 292 32 66 4 9 298 1018 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 30140 337 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
5963973 5963973 PRJNA884104_S_NODE_39025_length_331_cov_0.895349_g38282_i0 PRJNA884104 39025 331 0.895349 2.96360519 Caenorhabditis briggsae 6238 Nematoda Nematoda 63.9 1.44e-5   NTclustered gi|268574307|ref|XM_002642085.1| 6238 g38282 i0 95 1.5226586102719 40 2 12 0 290 329 664 625 Caenorhabditis briggsae Protein CBG18078 (CBG18078), partial mRNA blastn 504 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11064800 11064800 PRJNA884104_S_NODE_66069_length_256_cov_1.256831_g65326_i0 PRJNA884104 66069 256 1.256831 3.21748736 Necator americanus 51031 Nematoda Nematoda 75 4.97e-9   NTclustered gi|915267734|ref|XM_013445986.1| 51031 g65326 i0 81.053 0.37109375 95 16 37 2 8 101 265 358 Necator americanus uncharacterized protein (RB195_007271), partial mRNA blastn 95 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
12340798 12340798 PRJNA884104_S_NODE_8990_length_673_cov_13.983333_g8288_i0 PRJNA884104 8990 673 13.983333 94.10783109 Pristionchus hoplostomus 1355913 Nematoda Nematoda 161 1.0699999999999999e-34   NTclustered gi|524845312|gb|KC819366.1| 1355913 g8288 i0 80.717 17.2912332838039 223 29 32 11 213 428 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 11637 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
19986843 19986843 PRJNA884104_S_NODE_10296_length_629_cov_8.782374_g9582_i0 PRJNA884104 10296 629 8.782374 55.24113246 Pristionchus bulgaricus 1486442 Nematoda Nematoda 172 4.59e-38   NTclustered gi|610559349|gb|KJ395523.1| 1486442 g9582 i0 81.532 7.34817170111288 222 27 34 11 213 427 49 263 Pristionchus bulgaricus isolate sp18 ribosomal protein (rps-20) gene, partial cds blastn 4622 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bulgaricus
21263263 21263263 PRJNA884104_S_NODE_68017_length_251_cov_2.561798_g67274_i0 PRJNA884104 68017 251 2.561798 6.43011298 Caenorhabditis briggsae 6238 Nematoda Nematoda 165 2.8e-36   NTclustered gi|11095074|gb|AC084625.1|CBRG45C19 6238 g67274 i0 86.184 2.28685258964143 152 21 61 0 100 251 1389 1540 Caenorhabditis briggsae cosmid G45C19, complete sequence blastn 574 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;