contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1241274 | 1241274 | PRJNA884104_S_NODE_71381_length_250_cov_0.870056_g70638_i0 | PRJNA884104 | 71381 | 250 | 0.870056 | 2.17514 | Myxococcus | 32 | Bacteria | Bacteria | 152 | 2.17e-32 | NTclustered | gi|2869653495|gb|CP175551.1| | 33 | g70638 | i0 | 81.967 | 74.776 | 183 | 29 | 72 | 4 | 70 | 250 | 10302689 | 10302509 | Myxococcus fulvus strain KYC1117 chromosome, complete genome | blastn | 18694 | 152 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus fulvus | ||
| 6345300 | 6345300 | PRJNA884104_S_NODE_69645_length_251_cov_0.865169_g68902_i0 | PRJNA884104 | 69645 | 251 | 0.865169 | 2.17157419 | Myxococcales | 29 | Bacteria | Bacteria | 165 | 2.8e-36 | NTclustered | gi|1985695619|gb|CP069396.1| | 83451 | g68902 | i0 | 81.643 | 17.0239043824701 | 207 | 30 | 81 | 6 | 49 | 251 | 6508912 | 6508710 | Archangium violaceum strain SDU8 chromosome, complete genome | blastn | 4273 | 165 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium violaceum | ||
| 7619211 | 7619211 | PRJNA884104_S_NODE_20726_length_443_cov_2.005405_g19983_i0 | PRJNA884104 | 20726 | 443 | 2.005405 | 8.88394415 | Anaeromyxobacter | 161492 | Bacteria | Bacteria | 422 | 2.84e-113 | NTclustered | gi|470482295|ref|NR_076524.1| | 404589 | g19983 | i0 | 85.922 | 206.363431151242 | 412 | 38 | 92 | 16 | 2 | 410 | 1154 | 1548 | Anaeromyxobacter sp. Fw109-5 strain Fw109-5 23S ribosomal RNA, complete sequence | blastn | 91419 | 422 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Anaeromyxobacteraceae | Anaeromyxobacter | Anaeromyxobacter sp. Fw109-5 | ||
| 7619321 | 7619321 | PRJNA884104_S_NODE_64786_length_259_cov_1.080645_g64043_i0 | PRJNA884104 | 64786 | 259 | 1.080645 | 2.79887055 | Archangium | 47 | Bacteria | Bacteria | 148 | 2.9199999999999998e-31 | NTclustered | gi|2579687829|gb|CP043494.1| | 83450 | g64043 | i0 | 77.778 | 67.9150579150579 | 243 | 52 | 93 | 2 | 18 | 259 | 10633362 | 10633121 | Archangium minus strain Cbm 6 chromosome, complete genome | blastn | 17590 | 148 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium minus | ||
| 9789244 | 9789244 | PRJNA884104_S_NODE_69068_length_251_cov_0.865169_g68325_i0 | PRJNA884104 | 69068 | 251 | 0.865169 | 2.17157419 | Minicystis rosea | 888845 | Bacteria | Bacteria | 243 | 1.2600000000000001e-59 | NTclustered | gi|1127353251|gb|CP016211.1| | 888845 | g68325 | i0 | 84.252 | 1.56972111553785 | 254 | 34 | 100 | 6 | 1 | 251 | 319395 | 319645 | Minicystis rosea strain DSM 24000 chromosome, complete genome | blastn | 394 | 243 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Minicystis | Minicystis rosea | |||
| 11063911 | 11063911 | PRJNA884104_S_NODE_20949_length_441_cov_1.798913_g20206_i0 | PRJNA884104 | 20949 | 441 | 1.798913 | 7.93320633 | Vulgatibacter incomptus | 1391653 | Bacteria | Bacteria | 396 | 1.7099999999999995e-105 | NTclustered | gi|913607065|gb|CP012332.1| | 1391653 | g20206 | i0 | 85.567 | 173.281179138322 | 388 | 45 | 87 | 9 | 1 | 385 | 180491 | 180112 | Vulgatibacter incomptus strain DSM 27710, complete genome | blastn | 76417 | 396 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Vulgatibacteraceae | Vulgatibacter | Vulgatibacter incomptus | ||
| 14888381 | 14888381 | PRJNA884104_S_NODE_23552_length_417_cov_2.238372_g22809_i0 | PRJNA884104 | 23552 | 417 | 2.238372 | 9.33401124 | Archangium gephyra | 48 | Bacteria | Bacteria | 58.4 | 8.62e-4 | NTclustered | gi|827418478|gb|CP011509.1| | 48 | g22809 | i0 | 97.143 | 0.0839328537170264 | 35 | 0 | 8 | 1 | 303 | 336 | 8515860 | 8515826 | Archangium gephyra strain DSM 2261, complete genome | blastn | 35 | 58.4 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium gephyra | ||
| 22537447 | 22537447 | PRJNA884104_S_NODE_3778_length_1035_cov_1.962578_g3316_i0 | PRJNA884104 | 3778 | 1035 | 1.962578 | 20.3126823 | Minicystis rosea | 888845 | Bacteria | Bacteria | 78.7 | 1.73e-9 | NTclustered | gi|1127353251|gb|CP016211.1| | 888845 | g3316 | i0 | 74.479 | 0.241545893719807 | 192 | 43 | 18 | 6 | 401 | 589 | 7166245 | 7166057 | Minicystis rosea strain DSM 24000 chromosome, complete genome | blastn | 250 | 78.7 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Minicystis | Minicystis rosea | |||
| 22537576 | 22537576 | PRJNA884104_S_NODE_43918_length_314_cov_1.082988_g43175_i0 | PRJNA884104 | 43918 | 314 | 1.082988 | 3.40058232 | Pendulispora brunnea | 2905690 | Bacteria | Bacteria | 486 | 6.7999999999999986e-133 | NTclustered | gi|2698055994|gb|CP089982.1| | 2905690 | g43175 | i0 | 95.44 | 151.165605095541 | 307 | 11 | 97 | 3 | 7 | 312 | 9037631 | 9037327 | Pendulispora brunnea strain MSr12523 chromosome, complete genome | blastn | 47466 | 486 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Pendulisporaceae | Pendulispora | Pendulispora brunnea | ||
| 22918830 | 22918830 | PRJNA884104_S_NODE_41058_length_323_cov_1.712000_g40315_i0 | PRJNA884104 | 41058 | 323 | 1.712 | 5.52976 | Anaeromyxobacter | 161492 | Bacteria | Bacteria | 436 | 7.169999999999999e-118 | NTclustered | gi|470484038|ref|NR_076626.1| | 161493 | g40315 | i0 | 92.508 | 229.625386996904 | 307 | 20 | 95 | 3 | 1 | 306 | 929 | 625 | Anaeromyxobacter dehalogenans strain 2CP-1 23S ribosomal RNA gene, complete sequence | blastn | 74169 | 436 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Anaeromyxobacteraceae | Anaeromyxobacter | Anaeromyxobacter dehalogenans |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;