RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA884104 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6345298 6345298 PRJNA884104_S_NODE_68425_length_251_cov_1.000000_g67682_i0 PRJNA884104 68425 251 1 2.51 Mesomycoplasma 2923352 Bacteria Bacteria 283 7.409999999999999e-72   NTclustered gi|1958638472|gb|MW498281.1| 2100 g67682 i0 99.359 62.2111553784861 156 1 62 0 96 251 2244 2399 Mesomycoplasma hyorhinis strain MycSu21 23S ribosomal RNA gene, partial sequence blastn 15615 283 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
11064126 11064126 PRJNA884104_S_NODE_31909_length_362_cov_1.688581_g31166_i0 PRJNA884104 31909 362 1.688581 6.11266322 Mycoplasmopsis bovigenitalium 2112 Bacteria Bacteria 52.8 0.034   NTclustered gi|1109662972|dbj|AP017902.1| 2112 g31166 i0 100 0.154696132596685 28 0 8 0 100 127 670740 670767 Mycoplasma bovigenitalium DNA, complete genome blastn 56 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovigenitalium
21263527 21263527 PRJNA884104_S_NODE_82057_length_243_cov_1.341176_g81314_i0 PRJNA884104 82057 243 1.341176 3.25905768 Mariniplasma anaerobium 2735436 Bacteria Bacteria 67.6 7.82e-7   NTclustered gi|1964073164|dbj|AP024412.1| 2735436 g81314 i0 85.714 0.489711934156379 63 9 26 0 8 70 312507 312445 Mariniplasma anaerobium DNA, complete genome blastn 119 67.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Mariniplasma Mariniplasma anaerobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;