RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2137132 2137132 PRJNA884104_S_NODE_88442_length_209_cov_2.580882_g87699_i0 PRJNA884104 88442 209 2.580882 5.39404338 Hydra vulgaris 6087 Cnidaria other_Eukaryota 134 6.36e-27   NTclustered gi|2744846243|ref|XM_065790642.1| 6087 g87699 i0 86.29 2.55980861244019 124 15 92 2 83 205 174 296 PREDICTED: Hydra vulgaris large ribosomal subunit protein uL15 (LOC100215276), mRNA blastn 535 134 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
3793125 3793125 PRJNA884104_S_NODE_23223_length_420_cov_1.432277_g22480_i0 PRJNA884104 23223 420 1.432277 6.0155634 Metazoa 33208 Cnidaria other_Eukaryota 62.1 6.72e-5   NTclustered gi|2917940744|emb|OZ237568.1| 6108 g22480 i0 94.872 10.2571428571429 39 2 9 0 253 291 5102239 5102277 Anemonia sulcata genome assembly, chromosome: 14 blastn 4308 62.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
7238473 7238473 PRJNA884104_S_NODE_19586_length_455_cov_5.070681_g18843_i0 PRJNA884104 19586 455 5.070681 23.07159855 Eunicella cavolini 317547 Cnidaria other_Eukaryota 207 8.899999999999999e-49   NTclustered gi|2918369552|emb|OZ237724.1| 317547 g18843 i0 82.627 4.36043956043956 236 39 52 2 111 345 198087 197853 Eunicella cavolini genome assembly, chromosome: 8 blastn 1984 207 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
13995163 13995163 PRJNA884104_S_NODE_66691_length_254_cov_3.955801_g65948_i0 PRJNA884104 66691 254 3.955801 10.04773454 Opisthokonta 33154 Cnidaria other_Eukaryota 56.5 0.002   NTclustered gi|2917940724|emb|OZ237563.1| 6108 g65948 i0 100 0.236220472440945 30 0 12 0 171 200 11591077 11591048 Anemonia sulcata genome assembly, chromosome: 9 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
14889452 14889452 PRJNA884104_S_NODE_77352_length_246_cov_0.890173_g76609_i0 PRJNA884104 77352 246 0.890173 2.18982558 Rhopilema esculentum 499914 Cnidaria other_Eukaryota 171 5.879999999999999e-38   NTclustered gi|2729065020|ref|XM_065215859.1| 499914 g76609 i0 80.543 19.1544715447154 221 43 90 0 24 244 359 579 PREDICTED: Rhopilema esculentum V-type proton ATPase subunit B (LOC135696463), mRNA blastn 4712 171 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Rhizostomatidae Rhopilema Rhopilema esculentum
22537688 22537688 PRJNA884104_S_NODE_49238_length_298_cov_1.235556_g48495_i0 PRJNA884104 49238 298 1.235556 3.68195688 Hydra vulgaris 6087 Cnidaria other_Eukaryota 239 1.98e-58   NTclustered gi|2744808319|ref|XM_047276280.2| 6087 g48495 i0 81.849 11.3053691275168 292 46 97 7 1 289 641 354 PREDICTED: Hydra vulgaris ras-related protein Rab-11B (LOC100212746), transcript variant X1, mRNA blastn 3369 239 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;