RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA884104 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5964896 5964896 PRJNA884104_S_NODE_84525_length_242_cov_0.911243_g83782_i0 PRJNA884104 84525 242 0.911243 2.20520806 Bdellovibrio sp. HAGR004 3113895 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2663432256|dbj|AP029176.1| 3113895 g83782 i0 100 1 242 0 100 0 1 242 1655042 1654801 Bdellovibrio sp. HAGR004 DNA, complete genome blastn 242 448 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
21263388 21263388 PRJNA884104_S_NODE_74677_length_248_cov_0.880000_g73934_i0 PRJNA884104 74677 248 0.88 2.1824 Peredibacter starrii 28202 Bacteria Bacteria 202 2.0999999999999998e-47   NTclustered gi|2631252187|gb|CP139487.1| 28202 g73934 i0 85 1.61693548387097 200 29 81 1 46 245 2687293 2687095 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 401 202 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21643439 21643439 PRJNA884104_S_NODE_49157_length_298_cov_1.382222_g48414_i0 PRJNA884104 49157 298 1.382222 4.11902156 Bacteriovorax 146784 Bacteria Bacteria 496 1.06e-135   NTclustered gi|34604517|gb|AY294220.1| 242934 g48414 i0 96.644 91.8087248322148 298 10 100 0 1 298 452 155 Bacteriovorax sp. EPA 16S ribosomal RNA gene, partial sequence blastn 27359 496 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. EPA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;