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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA884104 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5069337 5069337 PRJNA884104_S_NODE_67184_length_253_cov_1.783333_g66441_i0 PRJNA884104 67184 253 1.783333 4.51183249 root 1 Root_unresolved Root_unresolved 457 4.16e-124   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g66441 i0 99.209 99.8735177865613 253 2 100 0 1 253 1669 1921 Moloney murine leukemia virus, complete genome blastn 25268 457 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10169752 10169752 PRJNA884104_S_NODE_13528_length_547_cov_2.008439_g12795_i0 PRJNA884104 13528 547 2.008439 10.98616133 Gammaretrovirus 153135 Viruses Viruses 994 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g12795 i0 99.452 98.8976234003656 547 3 100 0 1 547 4788 4242 Moloney murine leukemia virus, complete genome blastn 54097 994 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12340648 12340648 PRJNA884104_S_NODE_80150_length_244_cov_1.748538_g79407_i0 PRJNA884104 80150 244 1.748538 4.26643272 Gammaretrovirus murleu 3428959 Viruses Viruses 438 1.45e-118   NTclustered gi|18448741|gb|AF462057.1| 11801 g79407 i0 99.177 16.9467213114754 243 2 99 0 2 244 4765 5007 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 4135 438 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12720860 12720860 PRJNA884104_S_NODE_81730_length_244_cov_0.859649_g80987_i0 PRJNA884104 81730 244 0.859649 2.09754356 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|237628365|gb|FJ397031.1| 11723 g80987 i0 100 0.229508196721311 28 0 11 0 66 93 58 31 Simian immunodeficiency virus clone PKs1 MLN Env 3.15 V1 envelope glycoprotein (env) gene, partial cds blastn 56 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
14888873 14888873 PRJNA884104_S_NODE_48532_length_300_cov_1.356828_g47789_i0 PRJNA884104 48532 300 1.356828 4.070484 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.028   NTclustered gi|1900843575|gb|MT942748.1| 11676 g47789 i0 100 0.84 28 0 9 0 239 266 8346 8319 HIV-1 isolate 175014_6_TF from Rwanda, complete genome blastn 252 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
18712536 18712536 PRJNA884104_S_NODE_60415_length_269_cov_1.158163_g59672_i0 PRJNA884104 60415 269 1.158163 3.11545847 Lentivirus humimdef1 3418650 Viruses Viruses 58.4 5.3e-4   NTclustered gi|831250609|gb|KM438031.1| 11676 g59672 i0 92.5 0.14869888475836401 40 3 15 0 56 95 7934 7895 HIV-1 isolate REC003 from Cameroon, complete genome blastn 40 58.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25467850 25467850 PRJNA884104_S_NODE_1640_length_1528_cov_7.527835_g93_i13 PRJNA884104 1640 1528 7.527835 115.0253188 Gammaretrovirus 153135 Viruses Viruses 2739 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g93 i13 99.018 99.9803664921466 1528 15 100 0 1 1528 2757 4284 Moloney murine leukemia virus, complete genome blastn 152770 2739 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;