RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 10 ✖

bioproject 1

  • PRJNA884104 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
860802 860802 PRJNA884104_S_NODE_42221_length_319_cov_2.191057_g41478_i0 PRJNA884104 42221 319 2.191057 6.98947183 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 560 4.02e-155   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g41478 i0 98.433 171.514106583072 319 3 100 2 1 319 5625463 5625147 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 54713 560 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
5069251 5069251 PRJNA884104_S_NODE_2164_length_1346_cov_2.070699_g1859_i0 PRJNA884104 2164 1346 2.070699 27.87160854 Engelhardtia 139931 Bacteria Bacteria 54.7 0.038   NTclustered gi|1712638177|gb|CP036287.1| 2528011 g1859 i0 100 0.0430906389301634 29 0 2 0 666 694 304603 304575 Planctomycetes bacterium Pla133 chromosome, complete genome blastn 58 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Engelhardtia Engelhardtia mirabilis
5963912 5963912 PRJNA884104_S_NODE_35385_length_345_cov_3.095588_g34642_i0 PRJNA884104 35385 345 3.095588 10.6797786 Roseimicrobium gellanilyticum 748857 Bacteria Bacteria 627 4.259999999999999e-175   NTclustered gi|631251950|ref|NR_113148.1| 748857 g34642 i0 99.42 101.005797101449 345 2 100 0 1 345 1024 1368 Roseimicrobium gellanilyticum strain DC2a-G7 16S ribosomal RNA, partial sequence blastn 34847 627 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium gellanilyticum
5964609 5964609 PRJNA884104_S_NODE_69425_length_251_cov_0.865169_g68682_i0 PRJNA884104 69425 251 0.865169 2.17157419 Lacunisphaera limnophila 1838286 Bacteria Bacteria 172 1.67e-38   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g68682 i0 87.013 29.800796812749 154 18 61 2 7 159 3836038 3835886 Lacunisphaera limnophila strain IG16b, complete genome blastn 7480 172 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
7238571 7238571 PRJNA884104_S_NODE_24426_length_410_cov_1.370920_g23683_i0 PRJNA884104 24426 410 1.37092 5.620772 Roseimaritima multifibrata 1930274 Bacteria Bacteria 58.4 8.46e-4   NTclustered gi|1712444166|gb|CP036262.1| 1930274 g23683 i0 92.683 0.1 41 2 10 1 273 312 7185472 7185432 Roseimaritima multifibrata strain FF011L chromosome, complete genome blastn 41 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima multifibrata
11065103 11065103 PRJNA884104_S_NODE_81149_length_244_cov_0.900585_g80406_i0 PRJNA884104 81149 244 0.900585 2.1974274 Kolteria novifilia 2527975 Bacteria Bacteria 54.7 0.006   NTclustered gi|1712629967|gb|CP036279.1| 2527975 g80406 i0 100 0.118852459016393 29 0 12 0 187 215 5805540 5805512 Planctomycetes bacterium Pan216 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Kolteriales Kolteriaceae Kolteria Kolteria novifilia
16163204 16163204 PRJNA884104_S_NODE_27713_length_386_cov_2.546326_g26970_i0 PRJNA884104 27713 386 2.546326 9.82881836 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 230 1.5899999999999996e-55   NTclustered gi|2076441902|gb|CP075368.1| 2026777 g26970 i0 79.58 0.862694300518135 333 58 85 8 8 335 2179544 2179217 MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome blastn 333 230 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
17438525 17438525 PRJNA884104_S_NODE_20834_length_442_cov_2.086721_g20091_i0 PRJNA884104 20834 442 2.086721 9.22330682 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 778 0   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g20091 i0 98.416 77.1470588235294 442 7 100 0 1 442 5626226 5625785 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 34099 778 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
22538448 22538448 PRJNA884104_S_NODE_87178_length_236_cov_2.803681_g86435_i0 PRJNA884104 87178 236 2.803681 6.61668716 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 425 1.08e-114   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g86435 i0 99.153 281.245762711864 236 2 100 0 1 236 5626525 5626290 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 66374 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
25087609 25087609 PRJNA884104_S_NODE_80920_length_244_cov_0.900585_g80177_i0 PRJNA884104 80920 244 0.900585 2.1974274 Candidatus Uabimicrobium helgolandensis 3095367 Bacteria Bacteria 56.5 0.002   NTclustered gi|2793194503|gb|CP165719.1| 3095367 g80177 i0 100 0.844262295081967 30 0 12 0 149 178 4473488 4473517 Candidatus Uabimicrobium helgolandensis strain HlEnr_7 chromosome blastn 206 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Uabimicrobiia Candidatus Uabimicrobiales Candidatus Uabimicrobiaceae Candidatus Uabimicrobium Candidatus Uabimicrobium helgolandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;