RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA884104" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 11 ✖

bioproject 1

  • PRJNA884104 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
861373 861373 PRJNA884104_S_NODE_70041_length_250_cov_1.305085_g69298_i0 PRJNA884104 70041 250 1.305085 3.2627125 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.006   NTclustered gi|2794955305|ref|XM_067874935.1| 2049356 g69298 i0 96.875 0.128 32 1 13 0 41 72 6876 6907 Monocercomonoides exilis uncharacterized protein (MONOS_4836), partial mRNA blastn 32 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
2136504 2136504 PRJNA884104_S_NODE_56042_length_279_cov_1.737864_g55299_i0 PRJNA884104 56042 279 1.737864 4.84864056 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.007   NTclustered gi|2794958707|ref|XM_067876988.1| 2049356 g55299 i0 100 0.103942652329749 29 0 10 0 118 146 2616 2588 Monocercomonoides exilis uncharacterized protein (MONOS_6733), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
5964528 5964528 PRJNA884104_S_NODE_65425_length_257_cov_1.668478_g64682_i0 PRJNA884104 65425 257 1.668478 4.28798846 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 182 2.86e-41   NTclustered gi|2794954461|ref|XM_067876948.1| 2049356 g64682 i0 79.688 78.3657587548638 256 48 99 4 4 257 450 197 Monocercomonoides exilis histone H3 (MONOS_6699), mRNA blastn 20140 182 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
7238332 7238332 PRJNA884104_S_NODE_12366_length_573_cov_1.668000_g11639_i0 PRJNA884104 12366 573 1.668 9.55764 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 63.9 2.61e-5   NTclustered gi|2794971418|ref|XM_067874470.1| 2049356 g11639 i0 97.297 4.53752181500873 37 1 6 0 234 270 957 921 Monocercomonoides exilis uncharacterized protein (MONOS_4400), partial mRNA blastn 2600 63.9 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
9788840 9788840 PRJNA884104_S_NODE_4928_length_912_cov_3.190703_g4386_i0 PRJNA884104 4928 912 3.190703 29.09921136 Ergobibamus cyprinoides 926446 Fornicata other_Eukaryota 545 3.469999999999999e-150   NTclustered gi|339759377|dbj|AB600301.1| 926446 g4386 i0 80.379 79.484649122807 739 128 80 14 183 912 1279 549 Ergobibamus cyprinoides gene for beta-tubulin, partial cds, strain: CL blastn 72490 545 1 Eukaryota Metamonada   Fornicata       Ergobibamus Ergobibamus cyprinoides
13613992 13613992 PRJNA884104_S_NODE_22651_length_425_cov_0.988636_g21908_i0 PRJNA884104 22651 425 0.988636 4.201703 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 58.4 8.8e-4   NTclustered gi|2794937677|ref|XM_067875385.1| 2049356 g21908 i0 90.909 0.103529411764706 44 3 10 1 254 296 4178 4221 Monocercomonoides exilis uncharacterized protein (MONOS_5255), mRNA blastn 44 58.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
13995116 13995116 PRJNA884104_S_NODE_51151_length_293_cov_0.886364_g50408_i0 PRJNA884104 51151 293 0.886364 2.59704652 root 1 Root_unresolved Root_unresolved 78.7 4.48e-10   NTclustered gi|113967764|gb|DQ845790.1| 342808 g50408 i0 85 0.51877133105802 80 8 27 3 14 91 297 220 Trimastix pyriformis glucose-6-phosphate isomerase (GPI) mRNA, partial cds blastn 152 78.7 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
14888692 14888692 PRJNA884104_S_NODE_3892_length_1020_cov_3.160507_g3417_i0 PRJNA884104 3892 1020 3.160507 32.2371714 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.029   NTclustered gi|2794959330|ref|XM_067867632.1| 2049356 g3417 i0 96.875 0.0313725490196078 32 1 3 0 67 98 9818 9787 Monocercomonoides exilis putative Protein kinase domain (MONOS_1480), partial mRNA blastn 32 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
17439669 17439669 PRJNA884104_S_NODE_78534_length_245_cov_1.343023_g77791_i0 PRJNA884104 78534 245 1.343023 3.29040635 Trimastix marina 137419 Preaxostyla other_Eukaryota 215 2.67e-51   NTclustered gi|84105342|gb|DQ295218.1| 137419 g77791 i0 82.661 30.4367346938776 248 37 100 4 1 245 780 1024 Trimastix marina beta tubulin gene, partial cds blastn 7457 215 1 Eukaryota Metamonada   Preaxostyla     Trimastigidae Trimastix Trimastix marina
23813606 23813606 PRJNA884104_S_NODE_72319_length_249_cov_0.875000_g71576_i0 PRJNA884104 72319 249 0.875 2.17875 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 58.4 4.84e-4   NTclustered gi|2794971344|ref|XM_067868355.1| 2049356 g71576 i0 100 2.21686746987952 31 0 12 0 31 61 437 467 Monocercomonoides exilis uncharacterized protein (MONOS_15477), partial mRNA blastn 552 58.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
25087286 25087286 PRJNA884104_S_NODE_64780_length_259_cov_1.107527_g64037_i0 PRJNA884104 64780 259 1.107527 2.86849493 uncultured Oxymonadida sp. 413579 Preaxostyla other_Eukaryota 193 1.33e-44   NTclustered gi|119117144|gb|DQ925213.1| 413579 g64037 i0 80.992 7.75289575289575 242 46 93 0 15 256 198 439 Unidentified Oxymonadida clone R15 alpha-tubulin (Atub) mRNA, partial cds blastn 2008 193 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida     uncultured Oxymonadida sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;