RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15268985 15268985 PRJNA883229_P_NODE_13952_length_245_cov_1.813953_g13906_i0 PRJNA883229 13952 245 1.813953 4.44418485 Pseudomonadati 3379134 Bacteria Bacteria 62.1 3.67e-5   NTclustered gi|308273377|emb|FR695874.1| 201089 g13906 i0 100 286.861224489796 33 0 13 0 89 121 217877 217909 Uncultured Desulfobacterium sp. genomic DNA, clone SelH_gw24b_gw46b blastn 70281 62.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.
17438102 17438102 PRJNA883229_P_NODE_13514_length_246_cov_0.901734_g13468_i0 PRJNA883229 13514 246 0.901734 2.21826564 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 416 6.839999999999999e-112   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g13468 i0 97.154 1 246 7 100 0 1 246 1001969 1001724 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 246 416 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
21262010 21262010 PRJNA883229_P_NODE_9337_length_252_cov_0.871508_g9291_i0 PRJNA883229 9337 252 0.871508 2.19620016 Desulfonema limicola 45656 Bacteria Bacteria 54.7 0.006   NTclustered gi|2007129425|gb|CP061799.1| 45656 g9291 i0 100 0.115079365079365 29 0 12 0 195 223 5017940 5017968 Desulfonema limicola strain 5ac10 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema limicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;