RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3410796 3410796 PRJNA883229_P_NODE_8923_length_253_cov_0.866667_g8877_i0 PRJNA883229 8923 253 0.866667 2.19266751 Fretibacterium fastidiosum 651822 Bacteria Bacteria 335 2.0399999999999993e-87   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g8877 i0 90.514 2 253 24 100 0 1 253 443773 444025 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 506 335 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
9787969 9787969 PRJNA883229_P_NODE_7588_length_266_cov_1.212435_g7542_i0 PRJNA883229 7588 266 1.212435 3.2250771 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 364 2.7499999999999986e-96   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g7542 i0 91.353 1 266 23 100 0 1 266 2008150 2007885 Pyramidobacter sp. YE332 chromosome, complete genome blastn 266 364 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;