RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5963329 5963329 PRJNA883229_P_NODE_8725_length_253_cov_0.866667_g8679_i0 PRJNA883229 8725 253 0.866667 2.19266751 Candidatus Kuenenia stuttgartensis 174633 Bacteria Bacteria 468 1.92e-127   NTclustered gi|91202367|emb|CT573072.1| 174633 g8679 i0 100 3 253 0 100 0 1 253 724699 724951 Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) blastn 759 468 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Kuenenia Candidatus Kuenenia stuttgartensis
11063613 11063613 PRJNA883229_P_NODE_7409_length_268_cov_2.128205_g7363_i0 PRJNA883229 7409 268 2.128205 5.7035894 Pirellulales bacterium 2715253 Bacteria Bacteria 134 8.520000000000001e-27   NTclustered gi|2874253964|emb|OY970289.1| 2715253 g7363 i0 97.468 31.8358208955224 79 1 29 1 51 128 1506040 1506118 MAG: Pirellulales bacterium isolate MFD05442.bin.c.2 genome assembly, chromosome: 1 blastn 8532 134 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
18711309 18711309 PRJNA883229_P_NODE_15535_length_243_cov_0.917647_g15489_i0 PRJNA883229 15535 243 0.917647 2.22988221 Roseimaritima ulvae 980254 Bacteria Bacteria 54.7 0.006   NTclustered gi|1727550343|gb|CP042914.1| 980254 g15489 i0 100 0.119341563786008 29 0 12 0 215 243 2613845 2613817 Roseimaritima ulvae strain UC8 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima ulvae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;