RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10169637 10169637 PRJNA883229_P_NODE_13088_length_247_cov_0.896552_g13042_i0 PRJNA883229 13088 247 0.896552 2.21448344 Corallococcus 83461 Bacteria Bacteria 75 4.76e-9   NTclustered gi|337255776|gb|CP002830.1| 35 g13042 i0 92.308 0.421052631578947 52 4 21 0 191 242 5421086 5421035 Myxococcus macrosporus strain HW-1, complete genome blastn 104 75 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
23812134 23812134 PRJNA883229_P_NODE_10579_length_250_cov_0.881356_g10533_i0 PRJNA883229 10579 250 0.881356 2.20339 Archangium violaceum 83451 Bacteria Bacteria 292 1.2299999999999999e-74   NTclustered gi|1981856374|gb|CP069338.1| 83451 g10533 i0 87.843 2.708 255 24 99 6 2 250 3989163 3988910 Archangium violaceum strain SDU34 chromosome, complete genome blastn 677 292 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;