RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
860050 860050 PRJNA883229_P_NODE_6441_length_282_cov_1.492823_g6395_i0 PRJNA883229 6441 282 1.492823 4.20976086 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 516 7.67e-142   NTclustered gi|1563796921|emb|LR215008.1| 2107 g6395 i0 99.645 136.631205673759 282 1 100 0 1 282 799146 799427 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 38530 516 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
4688315 4688315 PRJNA883229_P_NODE_13944_length_245_cov_1.813953_g13898_i0 PRJNA883229 13944 245 1.813953 4.44418485 Mycoplasmopsis pulmonis 2107 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|1563796921|emb|LR215008.1| 2107 g13898 i0 100 125.595918367347 245 0 100 0 1 245 800292 800048 Mycoplasma pulmonis strain NCTC10139 genome assembly, chromosome: 1 blastn 30771 453 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis
16162774 16162774 PRJNA883229_P_NODE_8873_length_253_cov_0.866667_g8827_i0 PRJNA883229 8873 253 0.866667 2.19266751 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 333 7.319999999999999e-87   NTclustered gi|2187163482|emb|OV788640.1| 658143 g8827 i0 90.8 37.3438735177866 250 21 98 2 3 251 772166 771918 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 9448 333 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;