RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17438064 17438064 PRJNA883229_P_NODE_10514_length_250_cov_1.700565_g10468_i0 PRJNA883229 10514 250 1.700565 4.2514125 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 243 1.25e-59   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g10468 i0 86.697 3.668 218 29 87 0 1 218 410313 410530 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 917 243 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
23812203 23812203 PRJNA883229_P_NODE_15919_length_243_cov_0.917647_g15873_i0 PRJNA883229 15919 243 0.917647 2.22988221 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 263 9.3e-66   NTclustered gi|226088597|dbj|AP009153.1| 379066 g15873 i0 86.475 1.99588477366255 244 27 99 5 3 243 1955318 1955558 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 485 263 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;