RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14887888 14887888 PRJNA883229_P_NODE_10392_length_251_cov_0.876404_g10346_i0 PRJNA883229 10392 251 0.876404 2.19977404 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 235 2.1e-57   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g10346 i0 87.317 1.23505976095618 205 26 82 0 4 208 1343405 1343201 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 310 235 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
14887920 14887920 PRJNA883229_P_NODE_13172_length_247_cov_0.896552_g13126_i0 PRJNA883229 13172 247 0.896552 2.21448344 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 300 7.22e-77   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g13126 i0 89.167 82.7935222672065 240 26 97 0 8 247 2125930 2126169 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 20450 300 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
18711300 18711300 PRJNA883229_P_NODE_14815_length_244_cov_0.912281_g14769_i0 PRJNA883229 14815 244 0.912281 2.22596564 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 228 3.409999999999999e-55   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g14769 i0 84.016 1.90573770491803 244 32 98 7 1 240 3763668 3763908 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 465 228 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;