RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA883229" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9787830 9787830 PRJNA883229_P_NODE_11188_length_250_cov_0.875706_g11142_i0 PRJNA883229 11188 250 0.875706 2.189265 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 346 9.269999999999999e-91   NTclustered gi|1714016877|gb|MN244156.1| 67003 g11142 i0 92 160.864 250 15 100 3 1 250 859 615 Trypanosoma theileri isolate TBC15 large subunit ribosomal RNA gene, partial sequence blastn 40216 346 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
22536752 22536752 PRJNA883229_P_NODE_6318_length_284_cov_1.284360_g6272_i0 PRJNA883229 6318 284 1.28436 3.6475824 Moramonas marocensis 1805496 Root_unresolved Root_unresolved 464 2.8399999999999998e-126   NTclustered gi|1000883291|gb|KT878762.1| 1805496 g6272 i0 96.14 11.1901408450704 285 10 100 1 1 284 723 1007 Moramonas marocensis 18S ribosomal RNA gene, partial sequence blastn 3178 464 1 Eukaryota Discoba       Jakobida   Moramonas Moramonas marocensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;