RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA881257" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA881257 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16543233 16543233 PRJNA881257_P_NODE_4713_length_357_cov_1.090909_g4469_i0 PRJNA881257 4713 357 1.090909 3.89454513 Pendulispora 3375062 Bacteria Bacteria 549 9.829999999999996e-152   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g4469 i0 94.398 160.190476190476 357 20 100 0 1 357 7289284 7288928 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 57188 549 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
18709891 18709891 PRJNA881257_P_NODE_12455_length_183_cov_1.164179_g12210_i0 PRJNA881257 12455 183 1.164179 2.13044757 Labilithrix luteola 1391654 Bacteria Bacteria 244 2.4e-60   NTclustered gi|913610804|gb|CP012333.1| 1391654 g12210 i0 92.486 160.896174863388 173 9 93 3 1 171 7089462 7089292 Labilithrix luteola strain DSM 27648, complete genome blastn 29444 244 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
21260540 21260540 PRJNA881257_P_NODE_15037_length_168_cov_0.873950_g14792_i0 PRJNA881257 15037 168 0.87395 1.468236 Pendulispora albinea 2741071 Bacteria Bacteria 241 2.81e-59   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g14792 i0 92.398 145.690476190476 171 10 100 3 1 168 7191592 7191422 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 24476 241 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;