RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA881257" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA881257 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15268598 15268598 PRJNA881257_P_NODE_17392_length_163_cov_0.912281_g17147_i0 PRJNA881257 17392 163 0.912281 1.48701803 root 1 Root_unresolved Root_unresolved 302 1.22e-77   NTclustered gi|332029|gb|J02254.1|MLVENVPRM 11786 g17147 i0 100 213.496932515337 163 0 100 0 1 163 2593 2431 Moloney mink cell focus-forming proviral env gene and LTR blastn 34800 302 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21260596 21260596 PRJNA881257_P_NODE_6737_length_279_cov_1.973913_g6492_i0 PRJNA881257 6737 279 1.973913 5.50721727 Lentivirus humimdef1 3418650 Viruses Viruses 67.6 9.18e-7   NTclustered gi|291293885|gb|GU573782.1| 11676 g6492 i0 97.436 0.139784946236559 39 1 14 0 46 84 54 16 HIV-1 isolate A008_PBMC8 from Netherlands envelope glycoprotein (env) gene, partial cds blastn 39 67.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;