RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA879314" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879314 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4686263 4686263 PRJNA879314_P_NODE_4924_length_252_cov_0.871508_g4874_i0 PRJNA879314 4924 252 0.871508 2.19620016 Synergistaceae bacterium 2053624 Bacteria Bacteria 411 3.269999999999999e-110   NTclustered gi|2626233883|emb|OY821326.1| 2053624 g4874 i0 96.032 1 252 10 100 0 1 252 1077722 1077471 MAG: Synergistaceae bacterium isolate a20e232d-ae79-494a-a7eb-231c2e3632a3 genome assembly, chromosome: 1 blastn 252 411 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
16160517 16160517 PRJNA879314_P_NODE_4153_length_257_cov_1.298913_g4103_i0 PRJNA879314 4153 257 1.298913 3.33820641 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 255 1.66e-63   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g4103 i0 88.018 20.4357976653696 217 24 84 2 41 256 348323 348538 Pyramidobacter sp. YE332 chromosome, complete genome blastn 5252 255 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;