RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA879314" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879314 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7235964 7235964 PRJNA879314_P_NODE_11006_length_242_cov_0.923077_g10956_i0 PRJNA879314 11006 242 0.923077 2.23384634 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 189 1.5899999999999996e-43   NTclustered gi|2874253981|emb|OY970306.1| 1672391 g10956 i0 83.838 0.818181818181818 198 32 82 0 42 239 328347 328544 MAG: uncultured Chloroflexia bacterium isolate MFD02134.bin.c.1 genome assembly, chromosome: 1 blastn 198 189 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
9785664 9785664 PRJNA879314_P_NODE_10048_length_244_cov_0.912281_g9998_i0 PRJNA879314 10048 244 0.912281 2.22596564 Candidatus Promineifilum breve 1806508 Bacteria Bacteria 244 3.3799999999999997e-60   NTclustered gi|1041165931|emb|LN890655.2| 1806508 g9998 i0 86.222 3.06147540983607 225 31 92 0 20 244 2972029 2972253 Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I blastn 747 244 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve
9785731 9785731 PRJNA879314_P_NODE_6468_length_250_cov_0.881356_g6418_i0 PRJNA879314 6468 250 0.881356 2.20339 Anaerolineales bacterium 2073117 Bacteria Bacteria 174 4.63e-39   NTclustered gi|2556906889|gb|CP129483.1| 2073117 g6418 i0 80.349 1.796 229 45 92 0 22 250 803216 803444 MAG: Anaerolineales bacterium isolate cMAG.13 chromosome, complete genome blastn 449 174 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;