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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA879314" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

  • Sar · 17 ✖

bioproject 1

  • PRJNA879314 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5961078 5961078 PRJNA879314_P_NODE_245_length_836_cov_5.526868_g207_i0 PRJNA879314 245 836 5.526868 46.20461648 Aurantiochytrium sp. 1689870 SAR_Eukaryotes SAR_Eukaryotes 1223 0   NTclustered gi|1236772359|gb|MF766429.1| 1689870 g207 i0 92.976 47.3397129186603 840 45 100 14 1 836 2127 1298 Aurantiochytrium sp. strain CCAP_4062/3 large subunit ribosomal RNA gene, partial sequence blastn 39576 1223 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Aurantiochytrium Aurantiochytrium sp.
7236045 7236045 PRJNA879314_P_NODE_7386_length_248_cov_0.891429_g7336_i0 PRJNA879314 7386 248 0.891429 2.21074392 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 453 5.2600000000000005e-123   NTclustered gi|219130341|ref|XM_002185290.1| 556484 g7336 i0 99.597 1 248 1 100 0 1 248 976 729 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 248 453 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
8510768 8510768 PRJNA879314_P_NODE_1187_length_394_cov_7.495327_g1137_i0 PRJNA879314 1187 394 7.495327 29.53158838 Nitzschia ovalis 908985 SAR_Eukaryotes SAR_Eukaryotes 171 9.97e-38   NTclustered gi|2202538962|gb|OM891868.1| 908985 g1137 i0 84.091 48.2893401015228 176 28 45 0 1 176 5530 5705 Nitzschia ovalis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19026 171 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia ovalis
9785682 9785682 PRJNA879314_P_NODE_1268_length_384_cov_1.858521_g1218_i0 PRJNA879314 1268 384 1.858521 7.13672064 Schizochytrium sp. 1907177 SAR_Eukaryotes SAR_Eukaryotes 710 0   NTclustered gi|2178466423|gb|OM240814.1| 1907177 g1218 i0 100 10.140625 384 0 100 0 1 384 1308 1691 Schizochytrium sp. MAE gene, complete cds blastn 3894 710 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp.
11061461 11061461 PRJNA879314_P_NODE_10649_length_243_cov_0.917647_g10599_i0 PRJNA879314 10649 243 0.917647 2.22988221 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 171 5.8e-38   NTclustered gi|695406619|ref|XM_009525862.1| 67593 g10599 i0 84.181 1.95884773662551 177 26 72 2 36 211 137 312 Phytophthora sojae hypothetical protein partial mRNA blastn 476 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
11444193 11444193 PRJNA879314_P_NODE_8909_length_246_cov_0.901734_g8859_i0 PRJNA879314 8909 246 0.901734 2.21826564 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 158 4.58e-34   NTclustered gi|1620113280|ref|XM_028675005.1| 5849 g8859 i0 79.565 11.4349593495935 230 39 92 6 21 246 374 149 Plasmodium gallinaceum histone H3 variant, putative (H3.3), partial mRNA blastn 2813 159 0.993710691823899 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
13611561 13611561 PRJNA879314_P_NODE_931_length_438_cov_1.994521_g881_i0 PRJNA879314 931 438 1.994521 8.73600198 Thraustochytrium sp. LLF1b 1112570 SAR_Eukaryotes SAR_Eukaryotes 254 1.08e-62   NTclustered gi|1591621847|tpg|BK010455.1| 1112570 g881 i0 85.306 1.1027397260274 245 36 56 0 188 432 250 494 TPA_exp: Thraustochytrium sp. LLF1b mitochondrial ATP synthase subunit alpha mRNA, complete cds; nuclear gene for mitochondrial product blastn 483 254 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Thraustochytrium Thraustochytrium sp. LLF1b
14885856 14885856 PRJNA879314_P_NODE_3072_length_285_cov_1.122642_g3022_i0 PRJNA879314 3072 285 1.122642 3.1995297 Schizochytrium sp. ATCC 20888 368446 SAR_Eukaryotes SAR_Eukaryotes 172 1.94e-38   NTclustered gi|158518688|gb|AF378327.2| 368446 g3022 i0 100 0.652631578947368 93 0 33 0 193 285 7635 7543 Schizochytrium sp. ATCC_20888 polyunsaturated fatty acid synthase subunit A gene, complete cds blastn 186 172 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp. ATCC 20888
15268317 15268317 PRJNA879314_P_NODE_3712_length_269_cov_0.964286_g3662_i0 PRJNA879314 3712 269 0.964286 2.59392934 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 364 2.7899999999999998e-96   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g3662 i0 91.078 99.0446096654275 269 24 100 0 1 269 257 525 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 26643 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16160503 16160503 PRJNA879314_P_NODE_2193_length_318_cov_1.591837_g2143_i0 PRJNA879314 2193 318 1.591837 5.06204166 Schizochytrium sp. 1907177 SAR_Eukaryotes SAR_Eukaryotes 556 5.18e-154   NTclustered gi|2178466423|gb|OM240814.1| 1907177 g2143 i0 100 0.946540880503145 301 0 95 0 1 301 301 1 Schizochytrium sp. MAE gene, complete cds blastn 301 556 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp.
17817877 17817877 PRJNA879314_P_NODE_3154_length_283_cov_1.090476_g3104_i0 PRJNA879314 3154 283 1.090476 3.08604708 Entodinium 40635 SAR_Eukaryotes SAR_Eukaryotes 411 3.739999999999999e-110   NTclustered gi|2643596937|gb|PP067609.1| 47911 g3104 i0 92.908 81.1236749116608 282 20 99 0 1 282 1955 2236 Entodinium caudatum isolate SAG3_0_NT_6493 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 22958 414 0.992753623188406 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium caudatum
18709212 18709212 PRJNA879314_P_NODE_2415_length_308_cov_2.634043_g2365_i0 PRJNA879314 2415 308 2.634043 8.11285244 Schizochytrium sp. 1907177 SAR_Eukaryotes SAR_Eukaryotes 569 6.419999999999998e-158   NTclustered gi|2555203889|gb|OQ817713.1| 1907177 g2365 i0 100 48.2564935064935 308 0 100 0 1 308 554 247 Schizochytrium sp. MFE1 mRNA, complete cds blastn 14863 569 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp.
19984519 19984519 PRJNA879314_P_NODE_1516_length_362_cov_1.339100_g1466_i0 PRJNA879314 1516 362 1.3391 4.847542 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 224 6.869999999999998e-54   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g1466 i0 79.341 30.828729281768 334 57 91 12 30 357 1 328 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 11160 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21642472 21642472 PRJNA879314_P_NODE_1137_length_401_cov_1.317073_g1087_i0 PRJNA879314 1137 401 1.317073 5.28146273 Schizochytrium 4772 SAR_Eukaryotes SAR_Eukaryotes 736 0   NTclustered gi|2178466200|gb|OM240807.1| 1907177 g1087 i0 99.751 2 401 1 100 0 1 401 4147 4547 Schizochytrium sp. ACC gene, complete cds blastn 802 736 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp.
22534524 22534524 PRJNA879314_P_NODE_2418_length_308_cov_1.327660_g2368_i0 PRJNA879314 2418 308 1.32766 4.0891928 Thraustochytrium sp. LLF1b 1112570 SAR_Eukaryotes SAR_Eukaryotes 307 5.56e-79   NTclustered gi|1591621861|tpg|BK010463.1| 1112570 g2368 i0 84.918 93.8733766233766 305 44 99 2 5 308 1216 913 TPA_exp: Thraustochytrium sp. LLF1b heat shock cognate 70 kDa protein 2-like mRNA, complete cds blastn 28913 307 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Thraustochytrium Thraustochytrium sp. LLF1b
22534601 22534601 PRJNA879314_P_NODE_78_length_1314_cov_2.568896_g63_i0 PRJNA879314 78 1314 2.568896 33.75529344 Schizochytrium sp. ATCC 20888 368446 SAR_Eukaryotes SAR_Eukaryotes 1757 0   NTclustered gi|85822964|gb|DQ356648.1| 368446 g63 i0 100 87.3622526636225 951 0 72 0 161 1111 1 951 Schizochytrium sp. ATCC 20888 elongation factor 1-alpha mRNA, partial cds blastn 114794 1757 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp. ATCC 20888
25083911 25083911 PRJNA879314_P_NODE_10580_length_243_cov_0.917647_g10530_i0 PRJNA879314 10580 243 0.917647 2.22988221 Schizochytrium sp. 1907177 SAR_Eukaryotes SAR_Eukaryotes 263 9.3e-66   NTclustered gi|2178466464|gb|OM240815.1| 1907177 g10530 i0 100 1.27160493827161 142 0 58 0 102 243 1 142 Schizochytrium sp. ZWF gene, complete cds blastn 309 263 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;