RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879221 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12336109 12336109 PRJNA879221_P_NODE_37490_length_286_cov_1.065728_g37350_i0 PRJNA879221 37490 286 1.065728 3.04798208 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 171 6.99e-38   NTclustered gi|2031939004|emb|OD957472.1| 5763 g37350 i0 78.682 32.2237762237762 258 54 90 1 15 271 438 695 Naegleria fowleri Karachi_NF001 strain blastn 9216 171 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14884891 14884891 PRJNA879221_P_NODE_30292_length_321_cov_0.899194_g30152_i0 PRJNA879221 30292 321 0.899194 2.88641274 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 147 1.34e-30   NTclustered gi|2031938304|emb|OD957364.1| 5763 g30152 i0 79.147 19.1495327102804 211 44 66 0 109 319 1490 1280 Naegleria fowleri Karachi_NF001 strain blastn 6147 147 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14885151 14885151 PRJNA879221_P_NODE_50272_length_249_cov_0.875000_g50132_i0 PRJNA879221 50272 249 0.875 2.17875 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 95.3 3.69e-15   NTclustered gi|2031938304|emb|OD957364.1| 5763 g50132 i0 86.905 9.78313253012048 84 11 34 0 1 84 1275 1358 Naegleria fowleri Karachi_NF001 strain blastn 2436 95.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;