RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879221 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5068173 5068173 PRJNA879221_P_NODE_51664_length_248_cov_0.880000_g51524_i0 PRJNA879221 51664 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|2531950174|emb|OY282494.1| 498747 g51524 i0 96.774 0.237903225806452 31 1 13 0 210 240 1979147 1979177 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 59 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
13610804 13610804 PRJNA879221_P_NODE_50851_length_248_cov_1.565714_g50711_i0 PRJNA879221 50851 248 1.565714 3.88297072 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 169 2.13e-37   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g50711 i0 79.835 7.19354838709677 243 39 96 10 2 239 1863382 1863619 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 1784 169 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
22533903 22533903 PRJNA879221_P_NODE_53098_length_247_cov_0.885057_g52958_i0 PRJNA879221 53098 247 0.885057 2.18609079 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621706208|emb|OY764147.1| 2026734 g52958 i0 100 0.11336032388664 28 0 11 0 40 67 2805234 2805261 MAG: Dehalococcoidia bacterium isolate f074cb40-e989-4081-8985-b43b9a8eea1d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;