RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA879221 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2132665 2132665 PRJNA879221_P_NODE_63682_length_241_cov_0.916667_g63542_i0 PRJNA879221 63682 241 0.916667 2.20916747 Thermus sp. PS18 2849039 Bacteria Bacteria 329 8.95e-86   NTclustered gi|2359345130|gb|CP102606.1| 2849039 g63542 i0 91.286 30.7261410788382 241 21 100 0 1 241 2101605 2101845 Thermus sp. PS18 chromosome, complete genome blastn 7405 329 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. PS18
13610956 13610956 PRJNA879221_P_NODE_63971_length_241_cov_0.916667_g63831_i0 PRJNA879221 63971 241 0.916667 2.20916747 Thermus thermophilus 274 Bacteria Bacteria 326 1.16e-84   NTclustered gi|2199618697|dbj|AP025605.1| 274 g63831 i0 97.396 19.8755186721992 192 4 79 1 20 210 105289 105480 Thermus thermophilus SNM1-7 plasmid pTthSNM1-7c DNA, complete sequence blastn 4790 326 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;