RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA879221 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3407920 3407920 PRJNA879221_P_NODE_46083_length_251_cov_0.865169_g45943_i0 PRJNA879221 46083 251 0.865169 2.17157419 Betacoronavirus pandemicum 3418604 Viruses Viruses 54.7 0.006   NTclustered gi|2165835518|emb|OV196584.1| 2697049 g45943 i0 100 2.88844621513944 29 0 12 0 35 63 29907 29879 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 725 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4685455 4685455 PRJNA879221_P_NODE_42924_length_262_cov_2.523810_g42784_i0 PRJNA879221 42924 262 2.52381 6.6123822 Jujube closterovirus 1 3043313 Viruses Viruses 52.8 0.024   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g42784 i0 100 0.106870229007634 28 0 11 0 1 28 7 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
9784720 9784720 PRJNA879221_P_NODE_27168_length_338_cov_4.264151_g27028_i0 PRJNA879221 27168 338 4.264151 14.41283038 Carlavirus latensdianthi 3427766 Viruses Viruses 62.1 5.3e-5   NTclustered gi|1995060321|gb|MN450069.1| 12164 g27028 i0 97.297 0.192307692307692 37 0 11 1 1 37 8 43 Carnation latent virus isolate KL, complete genome blastn 65 62.1 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
22533647 22533647 PRJNA879221_P_NODE_31638_length_313_cov_2.566667_g31498_i0 PRJNA879221 31638 313 2.566667 8.03366771 Porcine bastrovirus 2588662 Viruses Viruses 58.4 6.29e-4   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g31498 i0 97.143 0.220447284345048 35 0 11 1 279 313 41 8 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 69 58.4 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;