RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA879221 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12336109 12336109 PRJNA879221_P_NODE_37490_length_286_cov_1.065728_g37350_i0 PRJNA879221 37490 286 1.065728 3.04798208 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 171 6.99e-38   NTclustered gi|2031939004|emb|OD957472.1| 5763 g37350 i0 78.682 32.2237762237762 258 54 90 1 15 271 438 695 Naegleria fowleri Karachi_NF001 strain blastn 9216 171 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14884891 14884891 PRJNA879221_P_NODE_30292_length_321_cov_0.899194_g30152_i0 PRJNA879221 30292 321 0.899194 2.88641274 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 147 1.34e-30   NTclustered gi|2031938304|emb|OD957364.1| 5763 g30152 i0 79.147 19.1495327102804 211 44 66 0 109 319 1490 1280 Naegleria fowleri Karachi_NF001 strain blastn 6147 147 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14885151 14885151 PRJNA879221_P_NODE_50272_length_249_cov_0.875000_g50132_i0 PRJNA879221 50272 249 0.875 2.17875 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 95.3 3.69e-15   NTclustered gi|2031938304|emb|OD957364.1| 5763 g50132 i0 86.905 9.78313253012048 84 11 34 0 1 84 1275 1358 Naegleria fowleri Karachi_NF001 strain blastn 2436 95.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
21259349 21259349 PRJNA879221_P_NODE_62497_length_242_cov_0.911243_g62357_i0 PRJNA879221 62497 242 0.911243 2.20520806 Procryptobia sorokini 351715 Euglenozoa other_Eukaryota 442 1.1099999999999995e-119   NTclustered gi|77994655|gb|DQ207593.1| 351715 g62357 i0 99.587 65.1859504132231 242 1 100 0 1 242 1064 1305 Procryptobia sorokini strain HFCC98 18S ribosomal RNA gene, partial sequence blastn 15775 442 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Procryptobia Procryptobia sorokini
22533845 22533845 PRJNA879221_P_NODE_47758_length_250_cov_0.870056_g47618_i0 PRJNA879221 47758 250 0.870056 2.17514 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 60.2 1.35e-4   NTclustered gi|62175856|gb|AC159427.1| 5691 g47618 i0 97.143 1.608 35 1 14 0 200 234 40576 40542 Trypanosoma brucei chromosome 8 clone RPCI93-27P2, complete sequence blastn 402 60.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;