RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA879221" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 4 ✖

bioproject 1

  • PRJNA879221 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1239656 1239656 PRJNA879221_P_NODE_20921_length_386_cov_3.555911_g20782_i0 PRJNA879221 20921 386 3.555911 13.72581646 Limnospira 2596745 Bacteria Bacteria 658 0   NTclustered gi|585302946|emb|FO818640.1| 376219 g20782 i0 99.449 63.5880829015544 363 0 94 2 25 386 5571963 5572324 Arthrospira sp. str. PCC 8005 chromosome, complete genome blastn 24545 658 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira indica
8893171 8893171 PRJNA879221_P_NODE_64167_length_241_cov_0.916667_g64027_i0 PRJNA879221 64167 241 0.916667 2.20916747 Synechococcales 1890424 Bacteria Bacteria 52.8 0.022   NTclustered gi|2895565184|gb|CP138934.1| 59925 g64027 i0 84.211 1.05394190871369 57 5 23 4 12 67 297731 297784 Prochlorococcus marinus str. GP2 chromosome, complete genome blastn 254 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus
16160049 16160049 PRJNA879221_P_NODE_9073_length_612_cov_20.556586_g8935_i0 PRJNA879221 9073 612 20.556586 125.80630632 Phormidium sp. NIES-2120 2510783 Bacteria Bacteria 928 0   NTclustered gi|1566846236|dbj|LC455614.1| 2510783 g8935 i0 95.238 204.955882352941 588 25 96 3 1 587 586 1 Phormidium sp. NIES-2120 gene for 23S ribosomal RNA, partial sequence blastn 125433 928 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium sp. NIES-2120
17435405 17435405 PRJNA879221_P_NODE_55534_length_246_cov_0.890173_g55394_i0 PRJNA879221 55534 246 0.890173 2.18982558 Synechococcus sp. KORDI-49 585423 Bacteria Bacteria 56.5 0.002   NTclustered gi|670928808|gb|CP006270.1| 585423 g55394 i0 100 0.121951219512195 30 0 12 0 153 182 1094429 1094400 Synechococcus sp. KORDI-49, complete genome blastn 30 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. KORDI-49

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;