RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA879067" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879067 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
855962 855962 PRJNA879067_P_NODE_72141_length_376_cov_4.168317_g68656_i0 PRJNA879067 72141 376 4.168317 15.67287192 Philodina citrina 468664 Rotifera other_Eukaryota 472 2.3199999999999996e-128   NTclustered gi|407227484|emb|FR856884.1| 468664 g68656 i0 89.501 44.5984042553191 381 29 100 7 1 376 1770 2144 Philodina citrina complete mitochondrial genome blastn 16769 472 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
2131869 2131869 PRJNA879067_P_NODE_96602_length_274_cov_3.621891_g93116_i0 PRJNA879067 96602 274 3.621891 9.92398134 Lecane bulla 96446 Rotifera other_Eukaryota 383 7.86e-102   NTclustered gi|61200802|gb|AY829083.1| 96446 g93116 i0 91.756 55.978102189781 279 17 100 2 1 274 1985 1708 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 15338 383 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
16541903 16541903 PRJNA879067_P_NODE_92573_length_289_cov_1.291667_g89087_i0 PRJNA879067 92573 289 1.291667 3.73291763 Ploima 84394 Rotifera other_Eukaryota 416 8.229999999999999e-112   NTclustered gi|61200811|gb|AY829085.1| 84397 g89087 i0 95.736 85.916955017301 258 11 89 0 3 260 1690 1433 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 24830 416 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
22531817 22531817 PRJNA879067_P_NODE_42798_length_592_cov_5.186898_g39339_i0 PRJNA879067 42798 592 5.186898 30.70643616 Philodina citrina 468664 Rotifera other_Eukaryota 671 0   NTclustered gi|407227484|emb|FR856884.1| 468664 g39339 i0 90.019 33.089527027027 521 48 88 4 66 585 1876 2393 Philodina citrina complete mitochondrial genome blastn 19589 671 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;