RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA879067" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13607451 13607451 PRJNA879067_P_NODE_105931_length_247_cov_1.770115_g102445_i0 PRJNA879067 105931 247 1.770115 4.37218405 Candidatus Nanosynbacter sp. BB002 3393757 Bacteria Bacteria 296 9.34e-76   NTclustered gi|2692798772|gb|CP146064.1| 3393757 g102445 i0 88.259 1 247 29 100 0 1 247 217756 218002 Candidatus Nanosynbacter sp. BB002 chromosome, complete genome blastn 247 296 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. BB002
17433405 17433405 PRJNA879067_P_NODE_47874_length_543_cov_3.304255_g44398_i0 PRJNA879067 47874 543 3.304255 17.94210465 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 797 0   NTclustered gi|2874253873|emb|OY969928.1| 179883 g44398 i0 94.902 114.351749539595 510 25 94 1 34 543 597636 597128 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD04212.bin.c.13 genome assembly, chromosome: 1 blastn 62093 797 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
22916592 22916592 PRJNA879067_P_NODE_30278_length_759_cov_11.517493_g26965_i0 PRJNA879067 30278 759 11.517493 87.41777187 Bacteria 2 Bacteria Bacteria 826 0   NTclustered gi|2028829559|gb|CP072328.1| 713051 g26965 i0 87.211 103.297760210804 735 83 96 10 1 731 905328 906055 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 78403 832 0.992788461538462 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
25081598 25081598 PRJNA879067_P_NODE_59580_length_452_cov_3.290237_g56095_i0 PRJNA879067 59580 452 3.290237 14.87187124 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 492 2.1799999999999996e-134   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g56095 i0 88 89.141592920354 425 39 94 2 1 425 138707 138295 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 40292 492 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;