RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA879067" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879067 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2130660 2130660 PRJNA879067_P_NODE_52042_length_508_cov_3.110345_g48558_i0 PRJNA879067 52042 508 3.110345 15.8005526 Halobacteriovorax sp. BALOs_7 2109558 Bacteria Bacteria 145 7.97e-30   NTclustered gi|1486380477|gb|CP027772.1| 2109558 g48558 i0 82.286 96.7716535433071 175 24 34 7 319 490 250284 250114 Halobacteriovorax sp. BALOs_7 chromosome, complete genome blastn 49160 145 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. BALOs_7
7231863 7231863 PRJNA879067_P_NODE_100306_length_261_cov_1.638298_g96820_i0 PRJNA879067 100306 261 1.638298 4.27595778 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 152 2.2799999999999998e-32   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g96820 i0 78.814 71.2030651340996 236 43 89 7 15 247 699098 699329 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 18584 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
13609853 13609853 PRJNA879067_P_NODE_84411_length_320_cov_4.036437_g80925_i0 PRJNA879067 84411 320 4.036437 12.9165984 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 479 1.1599999999999999e-130   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g80925 i0 96.54 157.1875 289 10 90 0 1 289 1292548 1292260 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 50300 479 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
14883430 14883430 PRJNA879067_P_NODE_55232_length_483_cov_4.700000_g51747_i0 PRJNA879067 55232 483 4.7 22.701 Peredibacter starrii 28202 Bacteria Bacteria 647 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g51747 i0 92.191 99.1469979296066 461 31 95 5 25 483 510684 511141 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 47888 647 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
16541843 16541843 PRJNA879067_P_NODE_85393_length_316_cov_3.213992_g81907_i0 PRJNA879067 85393 316 3.213992 10.15621472 Bacteriovorax 146784 Bacteria Bacteria 424 5.44e-114   NTclustered gi|1700689994|gb|CP030035.1| 960 g81907 i0 94.545 131.901898734177 275 14 87 1 18 291 1660621 1660347 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 41681 424 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
22530653 22530653 PRJNA879067_P_NODE_111938_length_228_cov_2.374194_g108452_i0 PRJNA879067 111938 228 2.374194 5.41316232 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 185 1.9199999999999998e-42   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g108452 i0 83.92 0.87280701754386 199 27 86 5 32 228 665648 665843 Bdellovibrio sp. qaytius chromosome, complete genome blastn 199 185 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
23808243 23808243 PRJNA879067_P_NODE_79059_length_343_cov_2.214815_g75573_i0 PRJNA879067 79059 343 2.214815 7.59681545 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 385 2.82e-102   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g75573 i0 89.137 191.230320699708 313 29 91 5 1 312 3250817 3250509 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 65592 385 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
24190656 24190656 PRJNA879067_P_NODE_61379_length_440_cov_3.615804_g57894_i0 PRJNA879067 61379 440 3.615804 15.9095376 Bdellovibrio 958 Bacteria Bacteria 350 1.3500000000000001e-91   NTclustered gi|2800948966|gb|CP168973.1| 959 g57894 i0 83.505 184.129545454545 388 51 87 11 1 381 1676837 1676456 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 81017 350 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;