RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA879067" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8509126 8509126 PRJNA879067_P_NODE_83927_length_322_cov_3.670683_g80441_i0 PRJNA879067 83927 322 3.670683 11.81959926 Haloferax volcanii 2246 Archaea Archaea 52.8 0.03   NTclustered gi|291370026|gb|CP001956.1| 309800 g80441 i0 100 0.0869565217391304 28 0 9 0 4 31 1819402 1819375 Haloferax volcanii DS2, complete sequence blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii
12335520 12335520 PRJNA879067_P_NODE_9350_length_1623_cov_2.479355_g7318_i0 PRJNA879067 9350 1623 2.479355 40.23993165 Salinigranum rubrum 755307 Archaea Archaea 54.7 0.046   NTclustered gi|1336549475|gb|CP026309.1| 755307 g7318 i0 100 0.0178681454097351 29 0 2 0 27 55 1743183 1743155 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
17434643 17434643 PRJNA879067_P_NODE_93634_length_285_cov_1.452830_g90148_i0 PRJNA879067 93634 285 1.45283 4.1405655 Methanobacterium formicicum 2162 Archaea Archaea 510 3.61e-140   NTclustered gi|952971377|emb|LN734822.1| 2162 g90148 i0 98.947 4 285 3 100 0 1 285 1280514 1280230 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1140 510 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;