RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8505979 8505979 PRJNA876641_P_NODE_11347_length_274_cov_2.203980_g11273_i0 PRJNA876641 11347 274 2.20398 6.0389052 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 313 1.05e-80   NTclustered gi|68479954|gb|DQ076149.1| 6182 g11273 i0 87.5 0.992700729927007 272 32 99 2 1 271 137 407 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 272 313 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
13607005 13607005 PRJNA876641_P_NODE_9951_length_282_cov_1.751196_g9877_i0 PRJNA876641 9951 282 1.751196 4.93837272 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 316 8.349999999999998e-82   NTclustered gi|68479954|gb|DQ076149.1| 6182 g9877 i0 87.319 0.978723404255319 276 35 98 0 7 282 407 132 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 276 316 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
25079328 25079328 PRJNA876641_P_NODE_2920_length_425_cov_2.139205_g2846_i0 PRJNA876641 2920 425 2.139205 9.09162125 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 712 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g2846 i0 96.941 1 425 12 100 1 1 425 447 24 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 425 712 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;