RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8506117 8506117 PRJNA876641_P_NODE_19467_length_246_cov_0.890173_g19393_i0 PRJNA876641 19467 246 0.890173 2.18982558 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 176 1.26e-39   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g19393 i0 84.831 0.723577235772358 178 24 72 3 1 176 5709979 5710155 Pirellula sp. SH-Sr6A, complete genome blastn 178 176 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
12332435 12332435 PRJNA876641_P_NODE_8630_length_290_cov_1.207373_g8556_i0 PRJNA876641 8630 290 1.207373 3.5013817 Stieleria varia 2528005 Bacteria Bacteria 56.5 0.002   NTclustered gi|2720418917|gb|CP151726.1| 2528005 g8556 i0 100 0.103448275862069 30 0 10 0 47 76 4770120 4770091 Stieleria varia strain Pla52n chromosome, complete genome blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Stieleria Stieleria varia
14881330 14881330 PRJNA876641_P_NODE_7112_length_312_cov_1.288703_g7038_i0 PRJNA876641 7112 312 1.288703 4.02075336 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 466 8.79e-127   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g7038 i0 99.225 236.663461538462 258 2 83 0 55 312 3094985 3095242 Pirellula sp. SH-Sr6A, complete genome blastn 73839 466 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A
19089919 19089919 PRJNA876641_P_NODE_11795_length_272_cov_1.160804_g11721_i0 PRJNA876641 11795 272 1.160804 3.15738688 Botrimarina 2795782 Bacteria Bacteria 470 5.81e-128   NTclustered gi|1712768844|gb|CP036350.1| 2527962 g11721 i0 97.794 223.503676470588 272 6 100 0 1 272 4246084 4245813 Planctomycetes bacterium K2D chromosome, complete genome blastn 60793 470 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium K2D
19979973 19979973 PRJNA876641_P_NODE_5336_length_344_cov_0.852399_g5262_i0 PRJNA876641 5336 344 0.852399 2.93225256 Pirellula sp. SH-Sr6A 1632865 Bacteria Bacteria 619 7.109999999999999e-173   NTclustered gi|1015448679|gb|CP011272.1| 1632865 g5262 i0 99.128 189.209302325581 344 3 100 0 1 344 3095848 3096191 Pirellula sp. SH-Sr6A, complete genome blastn 65088 619 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;