RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA876641 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8506282 8506282 PRJNA876641_P_NODE_8447_length_291_cov_2.293578_g8373_i0 PRJNA876641 8447 291 2.293578 6.67431198 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 148 3.3399999999999993e-31   NTclustered gi|294925483|ref|XM_002778887.1| 423536 g8373 i0 80.928 25.4707903780069 194 31 66 5 1 191 244 434 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 7412 148 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
12332256 12332256 PRJNA876641_P_NODE_18050_length_248_cov_0.880000_g17976_i0 PRJNA876641 18050 248 0.88 2.1824 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 141 4.65e-29   NTclustered gi|294933094|ref|XM_002780549.1| 423536 g17976 i0 90.654 47.2056451612903 107 8 43 2 128 233 595 490 Perkinsus marinus ATCC 50983 40S ribosomal protein S5, putative, mRNA blastn 11707 141 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
18704562 18704562 PRJNA876641_P_NODE_18355_length_248_cov_0.880000_g18281_i0 PRJNA876641 18355 248 0.88 2.1824 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.34e-4   NTclustered gi|294897524|ref|XM_002775945.1| 423536 g18281 i0 97.143 4.20564516129032 35 1 14 0 11 45 620 586 Perkinsus marinus ATCC 50983 Ran-binding protein, putative, mRNA blastn 1043 60.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
18704777 18704777 PRJNA876641_P_NODE_9435_length_285_cov_1.806604_g9361_i0 PRJNA876641 9435 285 1.806604 5.1488214 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 111 4.28e-20   NTclustered gi|294925483|ref|XM_002778887.1| 423536 g9361 i0 83.065 9.65964912280702 124 19 43 2 15 137 322 444 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 2753 111 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;