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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA876641 · 22 ✖

analysis 1

  • blastn · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2128437 2128437 PRJNA876641_P_NODE_15622_length_251_cov_1.370787_g15548_i0 PRJNA876641 15622 251 1.370787 3.44067537 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 243 1.2600000000000001e-59   NTclustered gi|57903370|gb|AY729836.1| 100863 g15548 i0 84.49 55.1673306772908 245 38 98 0 5 249 269 25 Plectospira myriandra alpha-tubulin gene, partial cds blastn 13847 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
2128443 2128443 PRJNA876641_P_NODE_15762_length_251_cov_0.865169_g15688_i0 PRJNA876641 15762 251 0.865169 2.17157419 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 163 1.01e-35   NTclustered gi|813141452|ref|XM_012343573.1| 695850 g15688 i0 83.908 7.88844621513944 174 24 69 4 80 251 767 596 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L8 mRNA blastn 1980 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4681460 4681460 PRJNA876641_P_NODE_12184_length_269_cov_2.403061_g12110_i0 PRJNA876641 12184 269 2.403061 6.46423409 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 143 1.42e-29   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g12110 i0 82.635 31.5947955390335 167 23 61 5 4 167 382 219 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 8499 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
4681521 4681521 PRJNA876641_P_NODE_16664_length_250_cov_0.870056_g16590_i0 PRJNA876641 16664 250 0.870056 2.17514 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 169 2.15e-37   NTclustered gi|813218880|ref|XM_012355428.1| 695850 g16590 i0 79.283 6.212 251 45 99 5 4 250 526 773 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 1553 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4681567 4681567 PRJNA876641_P_NODE_1964_length_495_cov_9.514218_g1890_i0 PRJNA876641 1964 495 9.514218 47.0953791 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.66e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g1890 i0 80.533 68.3393939393939 375 65 74 4 114 481 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
5956496 5956496 PRJNA876641_P_NODE_22165_length_242_cov_1.822485_g22091_i0 PRJNA876641 22165 242 1.822485 4.4104137 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 145 3.5e-30   NTclustered gi|2794915646|ref|XM_067893010.1| 164328 g22091 i0 84.354 41.3388429752066 147 23 61 0 96 242 1587 1441 Phytophthora ramorum Aldehyde dehydrogenase, mitochondrial (KRP23_7665), partial mRNA blastn 10004 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
7231441 7231441 PRJNA876641_P_NODE_22766_length_242_cov_0.911243_g22692_i0 PRJNA876641 22766 242 0.911243 2.20520806 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 250 7.2e-62   NTclustered gi|695369285|ref|XM_009515721.1| 67593 g22692 i0 85.957 85.4380165289256 235 31 97 2 1 234 2417 2650 Phytophthora sojae hypothetical protein mRNA blastn 20676 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8505964 8505964 PRJNA876641_P_NODE_10507_length_279_cov_1.466019_g10433_i0 PRJNA876641 10507 279 1.466019 4.09019301 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 193 1.45e-44   NTclustered gi|675208352|ref|XM_008914813.1| 761204 g10433 i0 81.78 6.18996415770609 236 37 84 4 46 278 409 177 Phytophthora parasitica INRA-310 ribonucleoprotein-associated protein mRNA blastn 1727 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8506029 8506029 PRJNA876641_P_NODE_15027_length_254_cov_1.441989_g14953_i0 PRJNA876641 15027 254 1.441989 3.66265206 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 113 1.04e-20   NTclustered gi|301107276|ref|XM_002902675.1| 403677 g14953 i0 80.132 0.594488188976378 151 30 59 0 104 254 1443 1293 Phytophthora infestans T30-4 adenosylhomocysteinase (PITG_10198), partial mRNA blastn 151 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
8506072 8506072 PRJNA876641_P_NODE_17147_length_249_cov_1.142045_g17073_i0 PRJNA876641 17147 249 1.142045 2.84369205 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 178 3.56e-40   NTclustered gi|695424642|ref|XM_009530689.1| 67593 g17073 i0 79.675 13.7228915662651 246 50 99 0 1 246 208 453 Phytophthora sojae hypothetical protein mRNA blastn 3417 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8506201 8506201 PRJNA876641_P_NODE_3167_length_413_cov_2.855882_g3093_i0 PRJNA876641 3167 413 2.855882 11.79479266 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 254 1.01e-62   NTclustered gi|675207712|ref|XM_008914493.1| 761204 g3093 i0 84.091 85.2421307506053 264 40 64 2 84 346 290 28 Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA blastn 35205 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9781083 9781083 PRJNA876641_P_NODE_21408_length_243_cov_2.111765_g21334_i0 PRJNA876641 21408 243 2.111765 5.13158895 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 128 3.54e-25   NTclustered gi|2795047393|ref|XM_067937896.1| 4785 g21334 i0 88.073 4.67489711934156 109 11 44 2 48 155 10 117 Phytophthora cinnamomi Nucleoside diphosphate kinase B (IUM83_13233), partial mRNA blastn 1136 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12332280 12332280 PRJNA876641_P_NODE_20030_length_245_cov_1.465116_g19956_i0 PRJNA876641 20030 245 1.465116 3.5895342 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 148 2.74e-31   NTclustered gi|698822200|ref|XM_009845827.1| 112090 g19956 i0 88.525 45.9755102040816 122 14 50 0 69 190 472 351 Aphanomyces astaci peptidyl-prolyl cis-trans isomerase 1 mRNA blastn 11264 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12332446 12332446 PRJNA876641_P_NODE_9170_length_287_cov_1.140187_g9096_i0 PRJNA876641 9170 287 1.140187 3.27233669 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 187 6.9699999999999984e-43   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g9096 i0 78.808 49.5644599303136 302 46 100 12 1 287 30687 30985 Achlya hypogyna mitochondrion, complete genome blastn 14225 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
12718076 12718076 PRJNA876641_P_NODE_4710_length_358_cov_2.161404_g4636_i0 PRJNA876641 4710 358 2.161404 7.73782632 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 87.9 9.29e-13   NTclustered gi|166038860|emb|CU355090.1| 100861 g4636 i0 85.542 20.1145251396648 83 12 23 0 257 339 750 668 Aphanomyces euteiches cDNA blastn 7201 87.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13606665 13606665 PRJNA876641_P_NODE_10411_length_280_cov_1.115942_g10337_i0 PRJNA876641 10411 280 1.115942 3.1246376 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 346 1.0599999999999999e-90   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g10337 i0 88.929 102.55 280 31 100 0 1 280 1340 1061 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 28714 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
14881260 14881260 PRJNA876641_P_NODE_2692_length_438_cov_3.331507_g2618_i0 PRJNA876641 2692 438 3.331507 14.59200066 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 78.7 6.98e-10   NTclustered gi|695382888|ref|XM_009519246.1| 67593 g2618 i0 100 0.550228310502283 42 0 10 0 184 225 357 398 Phytophthora sojae hypothetical protein mRNA blastn 241 78.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16541013 16541013 PRJNA876641_P_NODE_14613_length_256_cov_1.683060_g14539_i0 PRJNA876641 14613 256 1.68306 4.3086336 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 257 4.6e-64   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g14539 i0 84.825 21.66015625 257 37 100 2 1 256 388 133 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 5545 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17815972 17815972 PRJNA876641_P_NODE_22914_length_242_cov_0.786982_g22840_i0 PRJNA876641 22914 242 0.786982 1.90449644 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 171 5.77e-38   NTclustered gi|156986897|gb|EU080062.1| 4788 g22840 i0 81.193 90.702479338843 218 35 89 4 15 229 1517 1731 Phytophthora megasperma isolate PD_00017(P3136) heat shock protein 90 (HSP90) gene, partial cds blastn 21950 172 0.994186046511628 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
19979932 19979932 PRJNA876641_P_NODE_2496_length_449_cov_4.050532_g2422_i0 PRJNA876641 2496 449 4.050532 18.18688868 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 394 6.269999999999998e-105   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g2422 i0 84.635 85.9354120267261 397 59 88 2 1 396 524 129 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 38585 394 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22529770 22529770 PRJNA876641_P_NODE_10218_length_281_cov_1.139423_g10144_i0 PRJNA876641 10218 281 1.139423 3.20177863 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 514 2.75e-141   NTclustered gi|166044475|emb|CU367384.1| 100861 g10144 i0 99.644 42.8362989323843 281 1 100 0 1 281 712 432 Aphanomyces euteiches cDNA blastn 12037 514 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25079360 25079360 PRJNA876641_P_NODE_4940_length_353_cov_1.878571_g4866_i0 PRJNA876641 4940 353 1.878571 6.63135563 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 222 2.3999999999999996e-53   NTclustered gi|813184507|ref|XM_012351036.1| 695850 g4866 i0 87.065 24.5835694050992 201 20 56 4 44 241 139 336 Saprolegnia parasitica CBS 223.65 40S ribosomal protein mRNA blastn 8678 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;