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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11056926 11056926 PRJNA876641_P_NODE_2209_length_470_cov_1.944584_g2135_i0 PRJNA876641 2209 470 1.944584 9.1395448 Pristionchus maupasi 335527 Nematoda Nematoda 254 1.17e-62   NTclustered gi|150981849|gb|EF634494.1| 335527 g2135 i0 77.931 64.9787234042553 435 76 90 19 1 425 465 41 Pristionchus maupasi large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 30540 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maupasi
12332176 12332176 PRJNA876641_P_NODE_12270_length_269_cov_1.438776_g12196_i0 PRJNA876641 12270 269 1.438776 3.87030744 Caenorhabditis briggsae 6238 Nematoda Nematoda 106 1.86e-18   NTclustered gi|268563928|ref|XM_002638925.1| 6238 g12196 i0 76.389 2.89219330855019 216 39 78 10 50 259 202 411 Caenorhabditis briggsae Protein CBR-RPL-27 (Cbr-rpl-27), partial mRNA blastn 778 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
12718074 12718074 PRJNA876641_P_NODE_4310_length_369_cov_2.070946_g4236_i0 PRJNA876641 4310 369 2.070946 7.64179074 Pristionchus 54125 Nematoda Nematoda 145 5.62e-30   NTclustered gi|150984503|gb|EF634894.1| 70414 g4236 i0 90.179 11.6205962059621 112 9 30 2 98 208 151 261 Pristionchus lheritieri small subunit ribosomal protein 20 (rps-20) mRNA, complete cds blastn 4288 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus lheritieri
18704601 18704601 PRJNA876641_P_NODE_20655_length_244_cov_2.929825_g20581_i0 PRJNA876641 20655 244 2.929825 7.148773 Bunonema sp. VS-2014 1538689 Nematoda Nematoda 124 4.599999999999999e-24   NTclustered gi|675118911|gb|KJ877335.1| 1538689 g20581 i0 81.761 56.8606557377049 159 19 63 9 87 240 301 148 Bunonema sp. VS-2014 strain RS9014 large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 13874 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Bunonematidae Bunonema Bunonema sp. VS-2014
18704708 18704708 PRJNA876641_P_NODE_5555_length_339_cov_1.154135_g5481_i0 PRJNA876641 5555 339 1.154135 3.91251765 Necator americanus 51031 Nematoda Nematoda 76.8 1.9e-9   NTclustered gi|2707583078|ref|XM_013447403.2| 51031 g5481 i0 94 3.44837758112094 50 3 15 0 168 217 758 709 Necator americanus uncharacterized protein (RB195_001097), partial mRNA blastn 1169 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
19980011 19980011 PRJNA876641_P_NODE_8176_length_295_cov_1.639640_g8102_i0 PRJNA876641 8176 295 1.63964 4.836938 Strongyloides ratti 34506 Nematoda Nematoda 174 5.6e-39   NTclustered gi|1376144539|ref|XM_024652732.1| 34506 g8102 i0 87.097 17.1796610169492 155 18 52 2 56 209 81 234 Strongyloides ratti 40S ribosomal protein S14 (SRAE_2000174400), partial mRNA blastn 5068 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21255136 21255136 PRJNA876641_P_NODE_12197_length_269_cov_2.102041_g12123_i0 PRJNA876641 12197 269 2.102041 5.65449029 Koerneria sp. RS1982 358044 Nematoda Nematoda 206 1.7899999999999998e-48   NTclustered gi|150984687|gb|EF635005.1| 358044 g12123 i0 87.778 37.5315985130112 180 17 65 3 66 241 192 14 Koerneria sp. RS1982 small subunit ribosomal protein 28 (rps-28) mRNA, complete cds blastn 10096 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
21255165 21255165 PRJNA876641_P_NODE_14377_length_257_cov_2.657609_g14303_i0 PRJNA876641 14377 257 2.657609 6.83005513 Fictor sp. 1 VS-2014 1538694 Nematoda Nematoda 167 7.999999999999999e-37   NTclustered gi|675118977|gb|KJ877368.1| 1538694 g14303 i0 80.717 5.36575875486381 223 35 85 5 17 235 410 192 Fictor sp. 1 VS-2014 strain RS9001 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 1379 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Fictor Fictor sp. 1 VS-2014
21640579 21640579 PRJNA876641_P_NODE_2797_length_432_cov_2.941504_g2723_i0 PRJNA876641 2797 432 2.941504 12.70729728 Opisthokonta 33154 Nematoda Nematoda 219 3.88e-52   NTclustered gi|687022644|emb|LM525558.1| 174720 g2723 i0 83.913 81.4768518518518 230 36 53 1 1 230 390505 390733 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 35198 220 0.995454545454545 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22530088 22530088 PRJNA876641_P_NODE_9758_length_283_cov_2.580952_g9684_i0 PRJNA876641 9758 283 2.580952 7.30409416 Caenorhabditis remanei 31234 Nematoda Nematoda 259 1.43e-64   NTclustered gi|2445378187|ref|XM_003100352.2| 31234 g9684 i0 87.783 77.86925795053 221 27 78 0 63 283 1131 911 Caenorhabditis remanei uncharacterized protein (GCK72_016604), partial mRNA blastn 22037 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
25079145 25079145 PRJNA876641_P_NODE_12460_length_268_cov_1.348718_g12386_i0 PRJNA876641 12460 268 1.348718 3.61456424 Strongyloides papillosus 174720 Nematoda Nematoda 183 8.339999999999997e-42   NTclustered gi|374718480|gb|JF326458.1| 174720 g12386 i0 83.938 55.455223880597 193 30 72 1 7 198 204 12 Strongyloides papillosus eukaryotic translation elongation factor a alpha mRNA, complete cds blastn 14862 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;