RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2128515 2128515 PRJNA876641_P_NODE_20082_length_245_cov_1.250000_g20008_i0 PRJNA876641 20082 245 1.25 3.0625 Mytilus trossulus 6551 Mollusca Mollusca 211 3.45e-50   NTclustered gi|2694137160|ref|XM_063544444.1| 6551 g20008 i0 82.716 23.5755102040816 243 36 98 5 1 240 836 1075 PREDICTED: Mytilus trossulus ruvB-like 2 (LOC134685059), transcript variant X1, mRNA blastn 5776 211 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
11056802 11056802 PRJNA876641_P_NODE_14269_length_258_cov_1.605405_g14195_i0 PRJNA876641 14269 258 1.605405 4.1419449 Mytilus edulis 6550 Mollusca Mollusca 93.5 1.38e-14   NTclustered gi|2912332607|ref|XM_071279609.1| 6550 g14195 i0 89.333 1.45348837209302 75 6 29 2 165 238 459 386 PREDICTED: Mytilus edulis charged multivesicular body protein 2a-like (LOC139491760), transcript variant X2, mRNA blastn 375 93.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
15266378 15266378 PRJNA876641_P_NODE_20252_length_245_cov_0.895349_g20178_i0 PRJNA876641 20252 245 0.895349 2.19360505 Mytilus 6548 Mollusca Mollusca 219 2.0599999999999993e-52   NTclustered gi|2334736617|ref|XM_052202326.1| 6549 g20178 i0 86.207 17.069387755102 203 27 83 1 43 245 525 324 PREDICTED: Mytilus californianus ras-related protein Rab-1A (LOC127698700), transcript variant X1, mRNA blastn 4182 219 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
17431284 17431284 PRJNA876641_P_NODE_14174_length_258_cov_3.940541_g14100_i0 PRJNA876641 14174 258 3.940541 10.16659578 Dreissena polymorpha 45954 Mollusca Mollusca 171 6.21e-38   NTclustered gi|2364455822|ref|XM_052426037.1| 45954 g14100 i0 87.671 53.3953488372093 146 18 57 0 1 146 371 516 PREDICTED: Dreissena polymorpha 40S ribosomal protein S15-like (LOC127879267), transcript variant X2, mRNA blastn 13776 171 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
22529990 22529990 PRJNA876641_P_NODE_3018_length_420_cov_1.331412_g2944_i0 PRJNA876641 3018 420 1.331412 5.5919304 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.04   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g2944 i0 100 0.0666666666666667 28 0 7 0 149 176 48275826 48275853 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
22530022 22530022 PRJNA876641_P_NODE_5278_length_345_cov_1.441176_g5204_i0 PRJNA876641 5278 345 1.441176 4.9720572 Aplysia californica 6500 Mollusca Mollusca 65.8 4.19e-6   NTclustered gi|1897937734|ref|XM_013087444.2| 6500 g5204 i0 97.368 0.408695652173913 38 1 11 0 279 316 2242 2205 PREDICTED: Aplysia californica serine-rich adhesin for platelets (LOC101859357), mRNA blastn 141 65.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;