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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA876641 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
853138 853138 PRJNA876641_P_NODE_13681_length_261_cov_1.760638_g13607_i0 PRJNA876641 13681 261 1.760638 4.59526518 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 394 3.429999999999999e-105   NTclustered gi|330902897|gb|JF298273.1| 313558 g13607 i0 94.186 95.4329501915709 258 15 99 0 1 258 276 533 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 24908 394 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
3403821 3403821 PRJNA876641_P_NODE_1263_length_590_cov_16.524178_g1190_i0 PRJNA876641 1263 590 16.524178 97.4926502 Platyamoeba placida 3454475 Discosea other_Eukaryota 688 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g1190 i0 87.755 98.7271186440678 588 72 99 0 1 588 484 1071 Platyamoeba placida actin mRNA, partial cds blastn 58249 688 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
4681571 4681571 PRJNA876641_P_NODE_2004_length_490_cov_5.441247_g1930_i0 PRJNA876641 2004 490 5.441247 26.6621103 Vannella sp. strain W181G/I 325084 Discosea other_Eukaryota 682 0   NTclustered gi|62865938|gb|AY929913.1| 325084 g1930 i0 96.618 100.687755102041 414 9 99 4 81 490 1229 1641 Vannella sp. strain W181G/I 18S small subunit ribosomal RNA gene, partial sequence blastn 49337 682 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain W181G/I
8506091 8506091 PRJNA876641_P_NODE_18287_length_248_cov_0.880000_g18213_i0 PRJNA876641 18287 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 193 1.27e-44   NTclustered gi|88601113|gb|DQ390343.1| 5755 g18213 i0 84.694 0.790322580645161 196 26 78 3 19 211 451 645 Acanthamoeba castellanii sterol C-24 reductase-like protein mRNA, partial cds blastn 196 193 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8506176 8506176 PRJNA876641_P_NODE_23547_length_241_cov_0.916667_g23473_i0 PRJNA876641 23547 241 0.916667 2.20916747 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 265 2.5599999999999996e-66   NTclustered gi|470412384|ref|XM_004336417.1| 1257118 g23473 i0 87.946 92.6473029045643 224 27 93 0 2 225 971 748 Acanthamoeba castellanii str. Neff phosphoenolpyruvate carboxykinase (GTP), putative (ACA1_191500), partial mRNA blastn 22328 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9781134 9781134 PRJNA876641_P_NODE_2848_length_429_cov_1.941011_g2774_i0 PRJNA876641 2848 429 1.941011 8.32693719 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 237 1.06e-57   NTclustered gi|470467440|ref|XM_004341747.1| 1257118 g2774 i0 77.778 2.58974358974359 387 84 90 2 3 388 404 19 Acanthamoeba castellanii str. Neff guanine nucleotide-binding protein beta subunit, putative (ACA1_199990), partial mRNA blastn 1111 237 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12718067 12718067 PRJNA876641_P_NODE_24210_length_212_cov_2.712230_g24136_i0 PRJNA876641 24210 212 2.71223 5.7499276 Vannellidae 95227 Discosea other_Eukaryota 195 2.9299999999999997e-45   NTclustered gi|62865939|gb|AY929914.1| 325077 g24136 i0 95.868 51.561320754717 121 3 56 2 47 165 1227 1347 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 10931 196 0.994897959183674 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
18704683 18704683 PRJNA876641_P_NODE_4075_length_377_cov_1.276316_g4001_i0 PRJNA876641 4075 377 1.276316 4.81171132 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 150 1.2399999999999998e-31   NTclustered gi|470436786|ref|XM_004338880.1| 1257118 g4001 i0 81.538 5.44031830238727 195 25 50 8 79 267 1414 1603 Acanthamoeba castellanii str. Neff long chain acylcoA synthetase (ACA1_043260), partial mRNA blastn 2051 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18704725 18704725 PRJNA876641_P_NODE_6395_length_323_cov_1.732000_g6321_i0 PRJNA876641 6395 323 1.732 5.59436 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 213 1.31e-50   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g6321 i0 80.727 85.3529411764706 275 52 85 1 48 321 422 148 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 27569 213 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18704747 18704747 PRJNA876641_P_NODE_7635_length_304_cov_0.813853_g7561_i0 PRJNA876641 7635 304 0.813853 2.47411312 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 196 1.24e-45   NTclustered gi|470486807|ref|XM_004344593.1| 1257118 g7561 i0 80.709 2.45723684210526 254 47 83 2 13 265 66 318 Acanthamoeba castellanii str. Neff MC family transporter: phosphate, putative (ACA1_278610), partial mRNA blastn 747 196 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25079138 25079138 PRJNA876641_P_NODE_12020_length_270_cov_2.106599_g11946_i0 PRJNA876641 12020 270 2.106599 5.6878173 Vannella septentrionalis 197531 Discosea other_Eukaryota 468 2.07e-127   NTclustered gi|300078499|gb|GU001161.1| 197531 g11946 i0 97.802 69.7851851851852 273 3 100 1 1 270 2635 2907 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18842 468 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;