RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA876641 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8506190 8506190 PRJNA876641_P_NODE_2447_length_453_cov_1.181579_g2373_i0 PRJNA876641 2447 453 1.181579 5.35255287 Thaumatomastix sp. NIES-2378 717846 SAR_Eukaryotes SAR_Eukaryotes 388 2.95e-103   NTclustered gi|302563030|dbj|AB546338.1| 717846 g2373 i0 82.34 52.6887417218543 453 66 98 11 8 453 277 722 Thaumatomastix sp. NIES-2378 EFL mRNA for elongation factor like, partial cds blastn 23868 388 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomastix Thaumatomastix sp. NIES-2378
8506279 8506279 PRJNA876641_P_NODE_8227_length_294_cov_2.090498_g8153_i0 PRJNA876641 8227 294 2.090498 6.14606412 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 252 2.51e-62   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g8153 i0 82.886 48.4761904761905 298 34 100 12 1 294 3701 3985 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 14252 252 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
12332284 12332284 PRJNA876641_P_NODE_20210_length_245_cov_0.895349_g20136_i0 PRJNA876641 20210 245 0.895349 2.19360505 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 292 1.2e-74   NTclustered gi|193875699|gb|EU812202.1| 407209 g20136 i0 88.163 70.5183673469388 245 29 100 0 1 245 267 23 Thaumatomonas sp. TMT002 clone tshsp70-1 70 kDa heat shock protein mRNA, partial cds blastn 17277 292 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
19979850 19979850 PRJNA876641_P_NODE_18856_length_247_cov_0.885057_g18782_i0 PRJNA876641 18856 247 0.885057 2.18609079 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 425 1.14e-114   NTclustered gi|512134091|gb|KC575315.1| 175275 g18782 i0 97.59 100.611336032389 249 4 100 2 1 247 49 297 Uncultured cercozoan clone A.3.2 18S ribosomal RNA gene, partial sequence blastn 24851 425 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
22530057 22530057 PRJNA876641_P_NODE_7738_length_302_cov_1.772926_g7664_i0 PRJNA876641 7738 302 1.772926 5.35423652 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 289 1.97e-73   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g7664 i0 84.868 12.0695364238411 304 26 99 11 3 302 4009 3722 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 3645 289 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
23805416 23805416 PRJNA876641_P_NODE_22679_length_242_cov_0.911243_g22605_i0 PRJNA876641 22679 242 0.911243 2.20520806 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 195 3.42e-45   NTclustered gi|300676720|gb|GQ377713.1| 323453 g22605 i0 87.952 15.4132231404959 166 18 68 2 2 166 158 322 Heteromita sp. PRA-74 gcr5-like mRNA, partial sequence blastn 3730 195 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
25079413 25079413 PRJNA876641_P_NODE_840_length_694_cov_1.383253_g770_i0 PRJNA876641 840 694 1.383253 9.59977582 Cercomonas sp. ATCC 50316 45110 SAR_Eukaryotes SAR_Eukaryotes 311 1.04e-79   NTclustered gi|27734378|gb|AY099144.1| 45110 g770 i0 92.237 166.276657060519 219 17 32 0 412 630 427 209 Cercomonas ATCC50316 isolate pub6 polyubiquitin gene, partial cds blastn 115396 311 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50316
25465166 25465166 PRJNA876641_P_NODE_21920_length_243_cov_0.905882_g21846_i0 PRJNA876641 21920 243 0.905882 2.20129326 Thaumatomonas 45099 SAR_Eukaryotes SAR_Eukaryotes 444 3.09e-120   NTclustered gi|33309605|gb|AF411259.1| 188939 g21846 i0 99.588 99.4979423868313 243 1 100 0 1 243 1614 1372 Thaumatomonas seravini 18S ribosomal RNA gene, complete sequence blastn 24178 444 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas seravini

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;