RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA876641 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
853132 853132 PRJNA876641_P_NODE_13381_length_263_cov_1.436842_g13307_i0 PRJNA876641 13381 263 1.436842 3.77889446 Peredibacter starrii 28202 Bacteria Bacteria 475 1.2e-129   NTclustered gi|2631252187|gb|CP139487.1| 28202 g13307 i0 99.24 211.539923954373 263 2 100 0 1 263 511585 511847 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 55635 475 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
853298 853298 PRJNA876641_P_NODE_24061_length_228_cov_4.509677_g23987_i0 PRJNA876641 24061 228 4.509677 10.28206356 Peredibacter starrii 28202 Bacteria Bacteria 387 4.91e-103   NTclustered gi|2631252187|gb|CP139487.1| 28202 g23987 i0 97.368 20.5570175438597 228 5 100 1 1 228 512370 512144 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 4687 387 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
8506012 8506012 PRJNA876641_P_NODE_13687_length_261_cov_1.638298_g13613_i0 PRJNA876641 13687 261 1.638298 4.27595778 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 171 6.3e-38   NTclustered gi|2313021230|gb|CP102930.1| 959 g13613 i0 91.27 113.59386973180099 126 9 48 2 2 125 2386643 2386518 Bdellovibrio bacteriovorus strain kdesi chromosome, complete genome blastn 29648 171 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16155821 16155821 PRJNA876641_P_NODE_15313_length_252_cov_2.134078_g15239_i0 PRJNA876641 15313 252 2.134078 5.37787656 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 158 4.71e-34   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g15239 i0 95.876 0.384920634920635 97 4 38 0 101 197 2775205 2775301 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 97 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
23805346 23805346 PRJNA876641_P_NODE_18219_length_248_cov_0.880000_g18145_i0 PRJNA876641 18219 248 0.88 2.1824 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 363 9.119999999999997e-96   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g18145 i0 92.885 108.120967741935 253 12 100 5 1 248 3450450 3450199 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 26814 363 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;