RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA876641 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
853219 853219 PRJNA876641_P_NODE_18641_length_247_cov_1.327586_g18567_i0 PRJNA876641 18641 247 1.327586 3.27913742 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.02e-10   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g18567 i0 81.373 2.59109311740891 102 16 41 3 52 152 4512 4413 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 640 80.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
5066489 5066489 PRJNA876641_P_NODE_13464_length_262_cov_2.365079_g13390_i0 PRJNA876641 13464 262 2.365079 6.19650698 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|1735236402|ref|NC_044463.1| 2305497 g13390 i0 100 0.221374045801527 29 0 11 0 220 248 90687 90659 Halamphora americana chloroplast, complete genome blastn 58 54.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Amphipleuraceae Halamphora Halamphora americana
7616471 7616471 PRJNA876641_P_NODE_16466_length_250_cov_0.870056_g16392_i0 PRJNA876641 16466 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 224 4.53e-54   NTclustered gi|224003672|ref|XM_002291472.1| 296543 g16392 i0 85.253 86.336 217 32 87 0 31 247 89 305 Thalassiosira pseudonana CCMP1335 heat shock protein 70 (hsp70), mRNA blastn 21584 224 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
13606879 13606879 PRJNA876641_P_NODE_23391_length_241_cov_0.916667_g23317_i0 PRJNA876641 23391 241 0.916667 2.20916747 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 135 2.0900000000000003e-27   NTclustered gi|223998419|ref|XM_002288847.1| 296543 g23317 i0 79.208 7.67634854771784 202 36 83 5 1 199 217 19 Thalassiosira pseudonana CCMP1335 probable S-adenosylmethionine synthetase (AMS1), partial mRNA blastn 1850 135 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;