RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA876641 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3403885 3403885 PRJNA876641_P_NODE_15783_length_251_cov_0.865169_g15709_i0 PRJNA876641 15783 251 0.865169 2.17157419 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 174 4.65e-39   NTclustered gi|2874253709|emb|OY969474.1| 171953 g15709 i0 81.448 166.286852589641 221 33 95 8 36 251 1538110 1537893 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 41738 174 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
12332417 12332417 PRJNA876641_P_NODE_7130_length_311_cov_3.126050_g7056_i0 PRJNA876641 7130 311 3.12605 9.7220155 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 65.8 3.73e-6   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g7056 i0 95.122 0.131832797427653 41 2 13 0 119 159 1463586 1463626 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 41 65.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;