RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA876641" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA876641 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16541033 16541033 PRJNA876641_P_NODE_20013_length_245_cov_1.540698_g19939_i0 PRJNA876641 20013 245 1.540698 3.7747101 Thermus 270 Bacteria Bacteria 54.7 0.006   NTclustered gi|2199613261|dbj|AP025596.1| 274 g19939 i0 96.97 0.404081632653061 33 0 13 1 10 42 1265645 1265614 Thermus thermophilus SNM1-1 DNA, complete genome blastn 99 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
20364798 20364798 PRJNA876641_P_NODE_20136_length_245_cov_0.895349_g20062_i0 PRJNA876641 20136 245 0.895349 2.19360505 Deinococcus 1298 Bacteria Bacteria 337 5.45e-88   NTclustered gi|2264081587|gb|CP094462.1| 1299 g20062 i0 91.429 18.9551020408163 245 21 100 0 1 245 1261364 1261120 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 4644 337 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
22916173 22916173 PRJNA876641_P_NODE_8918_length_288_cov_1.432558_g8844_i0 PRJNA876641 8918 288 1.432558 4.12576704 Thermus 270 Bacteria Bacteria 267 8.74e-67   NTclustered gi|2199621453|dbj|AP025612.1| 274 g8844 i0 96.296 2.45486111111111 162 6 56 0 127 288 3102 3263 Thermus thermophilus SNM3-3 plasmid pTthSNM3-3d DNA, complete sequence blastn 707 268 0.996268656716418 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;