RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA874604 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12717867 12717867 PRJNA874604_P_NODE_80970_length_247_cov_0.885057_g80618_i0 PRJNA874604 80970 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|2732910911|ref|XM_065322223.1| 27933 g80618 i0 100 0.453441295546559 28 0 11 0 153 180 615 642 PREDICTED: Sycon ciliatum nucleolar transcription factor 1-B-like (LOC135808971), mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
19977903 19977903 PRJNA874604_P_NODE_10056_length_537_cov_1.659483_g9708_i0 PRJNA874604 10056 537 1.659483 8.91142371 Sycon ciliatum 27933 Porifera other_Eukaryota 331 6.0500000000000006e-86   NTclustered gi|2732929399|ref|XM_065331779.1| 27933 g9708 i0 82.973 64.756052141527 370 60 69 3 130 497 556 188 PREDICTED: Sycon ciliatum small ribosomal subunit protein uS12 (LOC135818406), mRNA blastn 34774 331 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;