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contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 25 ✖

tax_clade 1

bioproject 1

  • PRJNA874604 · 25 ✖

analysis 1

  • blastn · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
851388 851388 PRJNA874604_P_NODE_13881_length_469_cov_1.646465_g13529_i0 PRJNA874604 13881 469 1.646465 7.72192085 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 248 5.42e-61   NTclustered gi|698791735|ref|XM_009830598.1| 112090 g13529 i0 79.508 29.319829424307 366 62 76 11 4 361 194 554 Aphanomyces astaci malate dehydrogenase, NAD-dependent mRNA blastn 13751 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
852061 852061 PRJNA874604_P_NODE_51681_length_281_cov_1.336538_g51329_i0 PRJNA874604 51681 281 1.336538 3.75567178 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 65.8 3.33e-6   NTclustered gi|7274153|gb|AF063106.1|AF063106 4766 g51329 i0 95.122 2.34875444839858 41 2 15 0 1 41 956 996 Achlya bisexualis glyceraldehyde-3-phosphate dehydrogenase (GapC1) mRNA, complete cds blastn 660 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
1238103 1238103 PRJNA874604_P_NODE_57961_length_269_cov_2.346939_g57609_i0 PRJNA874604 57961 269 2.346939 6.31326591 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 130 1.11e-25   NTclustered gi|698807045|ref|XM_009838250.1| 112090 g57609 i0 81.761 1.63568773234201 159 25 58 4 3 159 360 516 Aphanomyces astaci 60S ribosomal protein mRNA blastn 440 130 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
3789835 3789835 PRJNA874604_P_NODE_36223_length_321_cov_1.241935_g35871_i0 PRJNA874604 36223 321 1.241935 3.98661135 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 305 2.09e-78   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g35871 i0 85.714 48.7227414330218 294 36 91 6 30 320 1 291 Phytophthora sojae hypothetical protein partial mRNA blastn 15640 305 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
4679995 4679995 PRJNA874604_P_NODE_28244_length_352_cov_2.537634_g27892_i0 PRJNA874604 28244 352 2.537634 8.93247168 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 200 1.12e-46   NTclustered gi|669170408|ref|XM_008622331.1| 1156394 g27892 i0 84.058 46.9346590909091 207 33 59 0 2 208 277 483 Saprolegnia diclina VS20 40S ribosomal protein S23 mRNA blastn 16521 200 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
4680197 4680197 PRJNA874604_P_NODE_39584_length_310_cov_2.206751_g39232_i0 PRJNA874604 39584 310 2.206751 6.8409281 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 387 6.989999999999998e-103   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g39232 i0 91.727 89.5967741935484 278 23 90 0 1 278 308 585 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 27775 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
4681306 4681306 PRJNA874604_P_NODE_94864_length_242_cov_1.822485_g94512_i0 PRJNA874604 94864 242 1.822485 4.4104137 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 122 1.6399999999999998e-23   NTclustered gi|2795047393|ref|XM_067937896.1| 4785 g94512 i0 87.156 1.23553719008264 109 12 45 2 48 155 10 117 Phytophthora cinnamomi Nucleoside diphosphate kinase B (IUM83_13233), partial mRNA blastn 299 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
7230232 7230232 PRJNA874604_P_NODE_52426_length_279_cov_2.830097_g52074_i0 PRJNA874604 52426 279 2.830097 7.89597063 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 176 1.46e-39   NTclustered gi|2794908691|ref|XM_067890661.1| 164328 g52074 i0 81.333 5.58781362007168 225 35 79 5 20 239 223 1 Phytophthora ramorum 40S ribosomal protein S25 (KRP23_5578), partial mRNA blastn 1559 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
8504793 8504793 PRJNA874604_P_NODE_40687_length_307_cov_1.683761_g40335_i0 PRJNA874604 40687 307 1.683761 5.16914627 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 126 1.66e-24   NTclustered gi|2795027745|ref|XM_067926220.1| 4785 g40335 i0 81.935 1.79153094462541 155 23 49 4 156 306 118 271 Phytophthora cinnamomi 40S ribosomal protein S2 (IUM83_02311), partial mRNA blastn 550 126 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9779321 9779321 PRJNA874604_P_NODE_20468_length_400_cov_0.941896_g20116_i0 PRJNA874604 20468 400 0.941896 3.767584 Phytophthora thermophila 880414 SAR_Eukaryotes SAR_Eukaryotes 353 9.38e-93   NTclustered gi|310770349|gb|HQ012916.1| 880414 g20116 i0 83 98.0575 400 58 98 8 7 398 983 586 Phytophthora thermophila strain CBS 127954 heat shock protein 90 (HSP90) gene, partial cds blastn 39223 353 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora thermophila
10166665 10166665 PRJNA874604_P_NODE_57348_length_271_cov_1.106061_g56996_i0 PRJNA874604 57348 271 1.106061 2.99742531 Bigyra 2683628 SAR_Eukaryotes SAR_Eukaryotes 318 2.2199999999999995e-82   NTclustered gi|538261478|gb|JX999125.1| 135482 g56996 i0 88.06 98.4391143911439 268 32 99 0 1 268 315 582 Lagenidium humanum strain ATCC 76726 beta-tubulin gene, partial cds blastn 26677 318 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis humana
11055100 11055100 PRJNA874604_P_NODE_14449_length_461_cov_1.659794_g14097_i0 PRJNA874604 14449 461 1.659794 7.65165034 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 257 8.84e-64   NTclustered gi|673014017|ref|XM_008862748.1| 157072 g14097 i0 81.505 22.6182212581345 319 53 69 5 88 403 480 165 Aphanomyces invadans archaeal ribosomal protein S17P mRNA blastn 10427 257 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
11441991 11441991 PRJNA874604_P_NODE_76829_length_249_cov_0.875000_g76477_i0 PRJNA874604 76829 249 0.875 2.17875 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 300 7.29e-77   NTclustered gi|1233048380|gb|KX251078.1| 1642459 g76477 i0 88.4 97.3694779116466 250 27 100 2 1 249 264 16 Phytophthora agathidicida isolate 67D5(ex-type) translation elongation factor 1-alpha gene, partial cds blastn 24245 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora agathidicida
13605390 13605390 PRJNA874604_P_NODE_34791_length_326_cov_1.217391_g34439_i0 PRJNA874604 34791 326 1.217391 3.96869466 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 220 7.94e-53   NTclustered gi|2794922612|ref|XM_067881576.1| 164328 g34439 i0 80.333 3.34969325153374 300 51 91 7 9 304 314 19 Phytophthora ramorum 40S ribosomal protein S3-1 (KRP23_11061), partial mRNA blastn 1092 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
14879346 14879346 PRJNA874604_P_NODE_11892_length_500_cov_3.175644_g11541_i0 PRJNA874604 11892 500 3.175644 15.87822 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 527 6.659999999999998e-145   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g11541 i0 87.665 87.8 454 54 91 2 32 484 945 493 A.klebsiana calmodulin gene, complete cds blastn 43900 527 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
16540906 16540906 PRJNA874604_P_NODE_88513_length_245_cov_0.895349_g88161_i0 PRJNA874604 88513 245 0.895349 2.19360505 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 206 1.6e-48   NTclustered gi|2794914530|ref|XM_067892428.1| 164328 g88161 i0 82.553 27.4285714285714 235 39 96 2 12 245 3939 3706 Phytophthora ramorum Serine/threonine-protein phosphatase 5 (KRP23_7150), partial mRNA blastn 6720 206 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
19978448 19978448 PRJNA874604_P_NODE_38776_length_313_cov_1.250000_g38424_i0 PRJNA874604 38776 313 1.25 3.9125 Pythium sp. 'quercum' 403825 SAR_Eukaryotes SAR_Eukaryotes 316 9.4e-82   NTclustered gi|114865163|gb|DQ911408.1| 403825 g38424 i0 85.161 87.2779552715655 310 44 99 2 1 309 237 545 Pythium sp. quercum strain OW340 clone 2 translation elongation factor 1-alpha gene, partial cds blastn 27318 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. 'quercum'
19978726 19978726 PRJNA874604_P_NODE_52416_length_279_cov_3.296117_g52064_i0 PRJNA874604 52416 279 3.296117 9.19616643 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 161 4.0899999999999995e-35   NTclustered gi|698822200|ref|XM_009845827.1| 112090 g52064 i0 81.095 32.3297491039427 201 38 72 0 69 269 551 351 Aphanomyces astaci peptidyl-prolyl cis-trans isomerase 1 mRNA blastn 9020 161 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
21253480 21253480 PRJNA874604_P_NODE_15517_length_447_cov_1.647059_g15165_i0 PRJNA874604 15517 447 1.647059 7.36235373 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 255 3.07e-63   NTclustered gi|675207712|ref|XM_008914493.1| 761204 g15165 i0 79.515 84.8881431767338 371 66 82 8 78 443 28 393 Phytophthora parasitica INRA-310 hsp70-like protein partial mRNA blastn 37945 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
21254605 21254605 PRJNA874604_P_NODE_76837_length_249_cov_0.869318_g76485_i0 PRJNA874604 76837 249 0.869318 2.16460182 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|2794926232|ref|XM_067883499.1| 164328 g76485 i0 100 0.112449799196787 28 0 11 0 217 244 491 464 Phytophthora ramorum Coiled-coil domain-containing protein 6 (KRP23_12857), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
21254702 21254702 PRJNA874604_P_NODE_82057_length_247_cov_0.885057_g81705_i0 PRJNA874604 82057 247 0.885057 2.18609079 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 134 7.750000000000001e-27   NTclustered gi|187467965|emb|CU694539.4| 123356 g81705 i0 95.238 34.8947368421053 84 4 34 0 158 241 56337 56254 H.parasitica DNA sequence from clone HpEmoy2-1B11, complete sequence blastn 8619 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
21640254 21640254 PRJNA874604_P_NODE_63897_length_259_cov_1.397849_g63545_i0 PRJNA874604 63897 259 1.397849 3.6204289099999998 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 143 1.36e-29   NTclustered gi|813164367|ref|XM_012347854.1| 695850 g63545 i0 77.459 1.88416988416988 244 51 93 4 16 257 331 90 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L37-A mRNA blastn 488 143 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22528549 22528549 PRJNA874604_P_NODE_40138_length_309_cov_1.279661_g39786_i0 PRJNA874604 40138 309 1.279661 3.95415249 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 108 6.07e-19   NTclustered gi|813156599|ref|XM_012346259.1| 695850 g39786 i0 88.043 1.13915857605178 92 10 30 1 87 178 313 403 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 352 108 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22529219 22529219 PRJNA874604_P_NODE_74498_length_249_cov_1.312500_g74146_i0 PRJNA874604 74498 249 1.3125 3.268125 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 124 4.709999999999999e-24   NTclustered gi|2795017041|ref|XM_067930511.1| 4785 g74146 i0 90.426 26.3534136546185 94 9 38 0 156 249 369 462 Phytophthora cinnamomi papain-like cysteine protease C1 (IUM83_06316), partial mRNA blastn 6562 124 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
22915536 22915536 PRJNA874604_P_NODE_27758_length_355_cov_1.049645_g27406_i0 PRJNA874604 27758 355 1.049645 3.72623975 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 228 5.2e-55   NTclustered gi|813141930|ref|XM_012343733.1| 695850 g27406 i0 80.612 3.34366197183099 294 57 83 0 60 353 13 306 Saprolegnia parasitica CBS 223.65 serine/threonine protein kinase mRNA blastn 1187 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;