RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA874604" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA874604 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13605133 13605133 PRJNA874604_P_NODE_21131_length_395_cov_0.947205_g20779_i0 PRJNA874604 21131 395 0.947205 3.74145975 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 91.6 8.01e-14   NTclustered gi|2107953857|gb|CP070792.1| 2026742 g20779 i0 91.176 1.91898734177215 68 4 17 2 301 366 902044 902111 MAG: Gemmatimonadetes bacterium isolate bin1440 chromosome blastn 758 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
13606646 13606646 PRJNA874604_P_NODE_99471_length_241_cov_0.916667_g99119_i0 PRJNA874604 99471 241 0.916667 2.20916747 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 172 1.6e-38   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g99119 i0 81.166 2.74688796680498 223 35 90 6 1 218 1441321 1441101 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 662 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
17430150 17430150 PRJNA874604_P_NODE_47434_length_289_cov_1.398148_g47082_i0 PRJNA874604 47434 289 1.398148 4.04064772 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 281 3.13e-71   NTclustered gi|575456455|gb|CP007128.1| 861299 g47082 i0 84.965 106.557093425606 286 33 97 8 1 280 3042327 3042608 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 30795 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;